Browse Element(s) Details


OsAffx.13003.1.S1_at

Description tigr:9631.m02385
TID=OsAffx.13003.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2447011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24450Os.49124.1.S1_at10/113+13906387..13913938expressed protein
LOC_Os03g24460Os.26468.1.S2_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24460Os.26468.1.S1_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24470OsAffx.13003.1.S1_at11/113+13929299..13929569hypothetical protein
LOC_Os03g24480OsAffx.25206.1.S1_at11/113+13932055..13933802hypothetical protein
LOC_Os03g24490Os.47463.1.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24490Os.14491.2.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24500OsAffx.3308.1.S1_at11/113+13945187..13946610hypothetical protein
LOC_Os03g24510Os.53356.1.S1_at11/113+13948943..13950640galactinol synthase, putative, expressed
LOC_Os03g24520Os.17928.1.S1_at11/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.56130.1.S1_at9/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.35897.2.S1_x_at1/113+13953834..13960354HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13003.1.S1_at--527--2191Chr03:13929503..13929527 (25 bp)
AACAGAAGATTCAGTCTAACCTTAA
LOC_Os03g24470
OsAffx.13003.1.S1_at--927--3411Chr03:13929501..13929525 (25 bp)
CAGAAGATTCAGTCTAACCTTAAAA
LOC_Os03g24470
OsAffx.13003.1.S1_at--821--2291Chr03:13929386..13929408 (23 bp)
AAAGGAAGAAGACCTCTCACCGTTG
LOC_Os03g24470
OsAffx.13003.1.S1_at--237--8191Chr03:13929383..13929407 (25 bp)
GGAAGAAGACCTCTCACCGTTGGGC
LOC_Os03g24470
OsAffx.13003.1.S1_at--1130--9671Chr03:13929370..13929394 (25 bp)
TCACCGTTGGGCAAATATGCTACAC
LOC_Os03g24470
OsAffx.13003.1.S1_at--450--6631Chr03:13929365..13929389 (25 bp)
GTTGGGCAAATATGCTACACTTGTT
LOC_Os03g24470
OsAffx.13003.1.S1_at--881--8231Chr03:13929361..13929385 (25 bp)
GGCAAATATGCTACACTTGTTGACT
LOC_Os03g24470
OsAffx.13003.1.S1_at--503--3111Chr03:13929357..13929381 (25 bp)
AATATGCTACACTTGTTGACTCAAA
LOC_Os03g24470
OsAffx.13003.1.S1_at--267--4851Chr03:13929352..13929376 (25 bp)
GCTACACTTGTTGACTCAAACACCA
LOC_Os03g24470
OsAffx.13003.1.S1_at--101--2071Chr03:13929347..13929371 (25 bp)
ACTTGTTGACTCAAACACCAATGAA
LOC_Os03g24470
OsAffx.13003.1.S1_at--1094--2131Chr03:13929333..13929357 (25 bp)
ACACCAATGAAGAACCCCGTACCAG
LOC_Os03g24470
Target Sequence 
AACAGAAGATTCAGTCTAACCTTAAAAAAGGAAGAAGACCTCTCACCGTTGGGCAAATATGCTACACTTGTTGACTCAAA
CACCAATGAAGAACCCCGTACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis