Browse Element(s) Details


OsAffx.3480.1.S1_at

Description tigr:9631.m04033
TID=OsAffx.3480.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4193211/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41910OsAffx.3479.1.S1_x_at11/113+23233153..23233389hypothetical protein
LOC_Os03g41920Os.53366.1.S1_at11/113+23234996..23239861expressed protein
LOC_Os03g41920Os.53366.1.S1_x_at11/113+23234996..23239861expressed protein
LOC_Os03g41926NANA3+23243567..23244260NA
LOC_Os03g41932OsAffx.3480.1.S1_at11/113+23244873..23245485hypothetical protein
LOC_Os03g41940OsAffx.25478.1.S1_at11/113+23248494..23249206hypothetical protein
LOC_Os03g41950Os.10731.1.A1_a_at11/113+23254416..23256911hypothetical protein
LOC_Os03g41950Os.38764.1.S1_x_at8/113+23254416..23256911hypothetical protein
LOC_Os03g41950OsAffx.13772.1.S1_at1/113+23254416..23256911hypothetical protein
LOC_Os03g41950Os.27520.8.S1_x_at1/113+23254416..23256911hypothetical protein
LOC_Os03g41950Os.10731.1.A1_at1/113+23254416..23256911hypothetical protein
LOC_Os03g41960Os.45173.1.S1_x_at6/113+23257839..23273135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41960OsAffx.8473.1.S1_x_at5/113+23257839..23273135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41960OsAffx.10632.1.S1_at1/113+23257839..23273135retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3480.1.S1_at--691--4111Chr03:23244960..23245444 (25 bp)
CGCCAACCACGAAAACGCTGACGTT
LOC_Os03g41932
OsAffx.3480.1.S1_at--341--4391Chr03:23244959..23245443 (25 bp)
GCCAACCACGAAAACGCTGACGTTG
LOC_Os03g41932
OsAffx.3480.1.S1_at--502--3251Chr03:23244957..23245441 (25 bp)
CAACCACGAAAACGCTGACGTTGGA
LOC_Os03g41932
OsAffx.3480.1.S1_at--650--1511Chr03:23244955..23245439 (25 bp)
ACCACGAAAACGCTGACGTTGGAGC
LOC_Os03g41932
OsAffx.3480.1.S1_at--873--3331Chr03:23244953..23244974 (22 bp)
CACGAAAACGCTGACGTTGGAGCAA
LOC_Os03g41932
OsAffx.3480.1.S1_at--226--4111Chr03:23244951..23244974 (24 bp)
CGAAAACGCTGACGTTGGAGCAAGT
LOC_Os03g41932
OsAffx.3480.1.S1_at--1067--2371Chr03:23244948..23244972 (25 bp)
AAACGCTGACGTTGGAGCAAGTGAA
LOC_Os03g41932
OsAffx.3480.1.S1_at--904--2251Chr03:23244925..23244949 (25 bp)
AAATCTTCGCGCTAGGAGGAGACGA
LOC_Os03g41932
OsAffx.3480.1.S1_at--327--3071Chr03:23244924..23244948 (25 bp)
AATCTTCGCGCTAGGAGGAGACGAT
LOC_Os03g41932
OsAffx.3480.1.S1_at--523--9571Chr03:23244922..23244946 (25 bp)
TCTTCGCGCTAGGAGGAGACGATTT
LOC_Os03g41932
OsAffx.3480.1.S1_at--78--9351Chr03:23244919..23244943 (25 bp)
TCGCGCTAGGAGGAGACGATTTGTA
LOC_Os03g41932
Target Sequence 
CGCCAACCACGAAAACGCTGACGTTGGAGCAAGTGAAATCTTCGCGCTAGGAGGAGACGATTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis