Browse Element(s) Details


OsAffx.3513.1.S1_at

Description tigr:9631.m04320
TID=OsAffx.3513.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4469011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44690OsAffx.3513.1.S1_at11/113+25140987..25141953hypothetical protein
LOC_Os03g44710Os.2293.1.S1_at10/113+25151258..25161157YABBY protein, putative, expressed
LOC_Os03g44710Os.17034.1.S1_at1/113+25151258..25161157YABBY protein, putative, expressed
LOC_Os03g44720OsAffx.25542.1.S1_at11/113+25166319..25167143hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3513.1.S1_at--217--651Chr03:25141189..25141209 (21 bp)
ATGCATGCGCGCTGCTGCGACATGG
LOC_Os03g44690
OsAffx.3513.1.S1_at--1022--3871Chr03:25141410..25141434 (25 bp)
CTGGGCGGATCCAGCCGCGCCGAAT
LOC_Os03g44690
OsAffx.3513.1.S1_at--789--5251Chr03:25141431..25141455 (25 bp)
GAATCCCCGGAGAAGGATCTGCCCA
LOC_Os03g44690
OsAffx.3513.1.S1_at--218--8051Chr03:25141439..25141463 (25 bp)
GGAGAAGGATCTGCCCACCCGGTGA
LOC_Os03g44690
OsAffx.3513.1.S1_at--854--3351Chr03:25141454..25141478 (25 bp)
CACCCGGTGACCAGATCGGGCAAGG
LOC_Os03g44690
OsAffx.3513.1.S1_at--94--7211Chr03:25141523..25141547 (25 bp)
GTCGTCGCCGCGATGAGAATCTACG
LOC_Os03g44690
OsAffx.3513.1.S1_at--944--8411Chr03:25141586..25141610 (25 bp)
GGCCGACAGAAGGAGCGCAACAGTT
LOC_Os03g44690
OsAffx.3513.1.S1_at--708--1851Chr03:25141645..25141669 (25 bp)
ACGACTGGTGGTTGCGTAGGCCGGC
LOC_Os03g44690
OsAffx.3513.1.S1_at--1--691Chr03:25141729..25141753 (25 bp)
ATGAGAGGCGTGTGCCGTTGCAGCG
LOC_Os03g44690
OsAffx.3513.1.S1_at--558--6611Chr03:25141756..25141780 (25 bp)
GTTGGCGCAAGCAGTGGCCGGTGCA
LOC_Os03g44690
OsAffx.3513.1.S1_at--837--1531Chr03:25141887..25141911 (25 bp)
AGCATCGCTGCGTCAATGGTGGATA
LOC_Os03g44690
Target Sequence 
ATGCATGCGCGCTGCTGCGACATGGCGGCGGGGATGGCGACGGCTGGGCGGATCCAGCCGCGCCGAATCCCCGGAGAAGG
ATCTGCCCACCCGGTGACCAGATCGGGCAAGGGCGAGGATGTAGTGGGAGAGCCGTCGTGGCGGCGGTGGCCGGTAGTCG
TCGCCGCGATGAGAATCTACGGCGGCACGGAGCTCGCAGCGACGACGGCGTCAGCGGGTGGCCGACAGAAGGAGCGCAAC
AGTTGGTTGGCTGGCCGGCAGCGACGGGCGACCGTGGCACGACTGGTGGTTGCGTAGGCCGGCGAGGCGCGGACAACGTC
GGCGGGGTTGGCCGGCGGCGGCAGTGGTTGGTGCAGCGGGAGATGAGAGGCGTGTGCCGTTGCAGCGCGGTTGGCGCAAG
CAGTGGCCGGTGCAGTGAGAGGCGACAAGGCGTGGCCGATCGTGGCATGCGGAGGCTGGCTGGGGGGGGGGCACCGGTGC
AGTGGTGCCCACGCGCCGGCGGAGGTTTAGATGGCAGTGGAGCATCGCTGCGTCAATGGTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis