Browse Element(s) Details


OsAffx.3559.1.S1_at

Description tigr:9631.m04868
TID=OsAffx.3559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4989011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49880Os.13012.1.S1_at11/113+28377677..28379633TCP family transcription factor containing protein, expressed
LOC_Os03g49890OsAffx.3559.1.S1_at11/113+28394232..28394540hypothetical protein
LOC_Os03g49900Os.10336.1.S1_at11/113+28397991..28405566zinc finger family protein, putative, expressed
LOC_Os03g49910OsAffx.19542.3.S1_x_at6/113+28407129..28411327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49920OsAffx.25653.1.S1_at11/113+28414232..28414537hypothetical protein
LOC_Os03g49930OsAffx.13428.3.S1_at10/113+28416126..28418512pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3559.1.S1_at--645--10591Chr03:28394474..28394498 (25 bp)
TTCTCCGTGTTGTCGCTCCCGGCTG
LOC_Os03g49890
OsAffx.3559.1.S1_at--388--2011Chr03:28394415..28394439 (25 bp)
ACTACTGCATCCAGGCCTAAGCGTC
LOC_Os03g49890
OsAffx.3559.1.S1_at--225--3771Chr03:28394370..28394394 (25 bp)
CTCTAGCGGCACGTTGGAGTGGACT
LOC_Os03g49890
OsAffx.3559.1.S1_at--1134--9971Chr03:28394367..28394391 (25 bp)
TAGCGGCACGTTGGAGTGGACTCCA
LOC_Os03g49890
OsAffx.3559.1.S1_at--766--5091Chr03:28394362..28394386 (25 bp)
GCACGTTGGAGTGGACTCCAGTGAA
LOC_Os03g49890
OsAffx.3559.1.S1_at--913--3811Chr03:28394347..28394371 (25 bp)
CTCCAGTGAAGACGCTCGCTCTCAT
LOC_Os03g49890
OsAffx.3559.1.S1_at--142--7411Chr03:28394309..28394333 (25 bp)
GTGATCGACGATGGGTGGTCCCACT
LOC_Os03g49890
OsAffx.3559.1.S1_at--1041--6251Chr03:28394300..28394324 (25 bp)
GATGGGTGGTCCCACTCCGTCTCTG
LOC_Os03g49890
OsAffx.3559.1.S1_at--305--7171Chr03:28394282..28394306 (25 bp)
GTCTCTGCCTTCCAAAAGTGGGCTG
LOC_Os03g49890
OsAffx.3559.1.S1_at--1159--4291Chr03:28394276..28394300 (25 bp)
GCCTTCCAAAAGTGGGCTGTCCTCG
LOC_Os03g49890
OsAffx.3559.1.S1_at--42--8351Chr03:28394262..28394286 (25 bp)
GGCTGTCCTCGCGGAGAATCTCGCT
LOC_Os03g49890
Target Sequence 
TTCTCCGTGTTGTCGCTCCCGGCTGCCGTGGACCCACGCCCGACGTTGCGAGCACCCCCACTACTGCATCCAGGCCTAAG
CGTCGCGCCGAGCTGCCGCACCCGCTCTAGCGGCACGTTGGAGTGGACTCCAGTGAAGACGCTCGCTCTCATGGCCAAGG
TCGTGGTGATCGACGATGGGTGGTCCCACTCCGTCTCTGCCTTCCAAAAGTGGGCTGTCCTCGCGGAGAATCTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis