Browse Element(s) Details


OsAffx.3699.1.S1_at

Description tigr:9632.m00121
TID=OsAffx.3699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0216011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02130NANA4+694746..695321retrotransposon protein, putative, unclassified
LOC_Os04g02140NANA4+697336..702030transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g02150Os.17971.1.S1_at11/114+706325..712800Eukaryotic initiation factor 3, gamma subunit family protein, expressed
LOC_Os04g02160OsAffx.3699.1.S1_at11/114+713542..713973hypothetical protein
LOC_Os04g02180Os.47004.1.S1_at1/114+722868..727451retrotransposon protein, putative, unclassified
LOC_Os04g02180OsAffx.13882.2.S1_at1/114+722868..727451retrotransposon protein, putative, unclassified
LOC_Os04g02180OsAffx.24330.2.S1_at1/114+722868..727451retrotransposon protein, putative, unclassified
LOC_Os04g02180OsAffx.25917.1.S1_at1/114+722868..727451retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3699.1.S1_at--543--1991Chr04:713888..713912 (25 bp)
ACTCCGACGTGGTGGCACTTGTGCT
LOC_Os04g02160
OsAffx.3699.1.S1_at--595--7531Chr04:713877..713901 (25 bp)
GTGGCACTTGTGCTCTCCGTGGTTA
LOC_Os04g02160
OsAffx.3699.1.S1_at--613--10771Chr04:713870..713894 (25 bp)
TTGTGCTCTCCGTGGTTACCGGCGG
LOC_Os04g02160
OsAffx.3699.1.S1_at--24--9591Chr04:713840..713864 (25 bp)
TCTTGCGCTTGTCACTGTCACGCCG
LOC_Os04g02160
OsAffx.3699.1.S1_at--264--7231Chr04:713755..713779 (25 bp)
GTCGCAGAGCGAGCTGCAGCACTCG
LOC_Os04g02160
OsAffx.3699.1.S1_at--787--4611Chr04:713747..713771 (25 bp)
GCGAGCTGCAGCACTCGTCGATGCT
LOC_Os04g02160
OsAffx.3699.1.S1_at--671--9351Chr04:713691..713715 (25 bp)
TCGCAGTCACCGCAGTCGCAGCAGT
LOC_Os04g02160
OsAffx.3699.1.S1_at--551--4051Chr04:713645..713669 (25 bp)
CGATGCTGATGTCGTCGGACATGTC
LOC_Os04g02160
OsAffx.3699.1.S1_at--476--771Chr04:713637..713661 (25 bp)
ATGTCGTCGGACATGTCGGCTATGG
LOC_Os04g02160
OsAffx.3699.1.S1_at--403--6011Chr04:713594..713618 (25 bp)
GAGAGCAGCTCGATCGCAGTAGCGA
LOC_Os04g02160
OsAffx.3699.1.S1_at--447--3451Chr04:713578..713602 (25 bp)
CAGTAGCGATGGATGGATGCAGATC
LOC_Os04g02160
Target Sequence 
ACTCCGACGTGGTGGCACTTGTGCTCTCCGTGGTTACCGGCGGCCGCCTCTTGCGCTTGTCACTGTCACGCCGCCGTGGT
TCCCCGCAGCAGCAGCAGCAGCAGAAGAGGCGGCTGAAGAAGGACGCCACGGCGTCGCAGAGCGAGCTGCAGCACTCGTC
GATGCTGCAGTCGCAGTCGCAGCAGCAGCAGCAACAGTCGCAGTCACCGCAGTCGCAGCAGTCGCAGTCGCAGTCGCCGC
AGTCGATGCTGATGTCGTCGGACATGTCGGCTATGGGCGGCGGCGGCCGGCGGCGAGAGCAGCTCGATCGCAGTAGCGAT
GGATGGATGCAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis