Browse Element(s) Details


OsAffx.3709.1.S1_at

Description tigr:9632.m00228
TID=OsAffx.3709.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor protein kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0321011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03180Os.27402.1.S1_at11/114+1316762..1323620Leucine Rich Repeat family protein, expressed
LOC_Os04g03190Os.8747.3.S1_x_at1/114+1330680..1336174retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03200OsAffx.9826.1.S1_at1/114+1339232..1344203hypothetical protein
LOC_Os04g03210OsAffx.3709.1.S1_at11/114+1345753..1349313Leucine Rich Repeat family protein
LOC_Os04g03220OsAffx.13094.2.S1_at10/114+1353230..1354970hypothetical protein
LOC_Os04g03230OsAffx.13637.1.S1_at11/114+1359436..1361527hypothetical protein
LOC_Os04g03230OsAffx.17226.1.S1_at1/114+1359436..1361527hypothetical protein
LOC_Os04g03240NANA4+1365662..1367213Transposable element protein, putative, Transposase_28
LOC_Os04g03250OsAffx.22699.1.S1_x_at1/114+1368770..1375575retrotransposon protein, putative, unclassified
LOC_Os04g03250OsAffx.8201.1.S1_x_at1/114+1368770..1375575retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3709.1.S1_at--166--3531Chr04:1346951..1346975 (25 bp)
CATGCAGGGCGGGTCAAGTTGTACA
LOC_Os04g03210
OsAffx.3709.1.S1_at--654--7911Chr04:1346852..1346876 (25 bp)
GGTTGCACACACAAACATCTGCTAG
LOC_Os04g03210
OsAffx.3709.1.S1_at--730--6191Chr04:1346823..1346847 (25 bp)
GAGGAATCTGTTTCTACCACTCACA
LOC_Os04g03210
OsAffx.3709.1.S1_at--341--2151Chr04:1346096..1346120 (25 bp)
ACAGCTACGGGATAATGCTCCTTGA
LOC_Os04g03210
OsAffx.3709.1.S1_at--352--811Chr04:1346011..1346035 (25 bp)
ATGGGTGCGAGCGTCAATTCCACAC
LOC_Os04g03210
OsAffx.3709.1.S1_at--954--1951Chr04:1345899..1345923 (25 bp)
ACTGTGGACTCGAAACTGCTGTTGG
LOC_Os04g03210
OsAffx.3709.1.S1_at--195--5551Chr04:1345888..1345912 (25 bp)
GAAACTGCTGTTGGAGACTCTTTTA
LOC_Os04g03210
OsAffx.3709.1.S1_at--975--1391Chr04:1345874..1345898 (25 bp)
AGACTCTTTTAGTTCCCATGGTGGA
LOC_Os04g03210
OsAffx.3709.1.S1_at--737--151Chr04:1345843..1345867 (25 bp)
ATTATGTTGCGTTCGGGAGTCCCCT
LOC_Os04g03210
OsAffx.3709.1.S1_at--398--8951Chr04:1345819..1345843 (25 bp)
TGACTCACGCATCAGTATGCACGAT
LOC_Os04g03210
OsAffx.3709.1.S1_at--879--3331Chr04:1345793..1345817 (25 bp)
CACTGTCTCGGCTGAAGCGGATCAA
LOC_Os04g03210
Target Sequence 
CATGCAGGGCGGGTCAAGTTGTACATTGTGACATCAAGCCAAGCAATGTTCTACTTGATGGTGATATGACAGCCAAGATT
GGTGACTTTGGGCTTGCAAGGTTGCACACACAAACATCTGCTAGAGACGAGGAATCTGTTTCTACCACTCACAATATGAA
GGGTACCATAGGTTATATACCTCCAGAATACGGATATGGAGCCAAAACATCGACAAGTGGTGATGTCTACAGCTACGGGA
TAATGCTCCTTGAGATGATCACAGGAAAGAGTCCTGTAGATCAAATGTTTGGAGGAGAGATGAACCTGGAAAAATGGGTG
CGAGCGTCAATTCCACACCAAGCTGATGAAGTTGTTGACAAGCGGTTTATGATGACAGGTTCTGAAGAATCCTCAGCTGA
TGGGCAGCAACAACAGCAGGTTGATACTGTGGACTCGAAACTGCTGTTGGAGACTCTTTTAGTTCCCATGGTGGATGTTG
CATTATGTTGCGTTCGGGAGTCCCCTGACTCACGCATCAGTATGCACGATGCACTGTCTCGGCTGAAGCGGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis