Browse Element(s) Details


OsAffx.3762.1.S1_at

Description tigr:9632.m00886
TID=OsAffx.3762.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1014011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10100NANA4+5430295..5437020retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10110NANA4+5440620..5441805retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.1651.1.S1_at4/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.1651.1.S1_x_at3/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120Os.51491.1.S1_at1/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.8201.1.S1_x_at1/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10130OsAffx.3761.1.S1_x_at11/114+5447866..5450737hypothetical protein
LOC_Os04g10130OsAffx.3761.1.S1_at11/114+5447866..5450737hypothetical protein
LOC_Os04g10140OsAffx.3762.1.S1_at11/114+5459004..5459727hypothetical protein
LOC_Os04g10140Os.37711.3.S1_x_at1/114+5459004..5459727hypothetical protein
LOC_Os04g10150Os.57362.1.S1_at10/114+5463453..5464267expressed protein
LOC_Os04g10160Os.16305.1.S1_at11/114+5464874..5466769Cytochrome P450 CYP99A1, putative, expressed
LOC_Os04g10170OsAffx.25949.1.S1_at11/114+5484368..5484840hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3762.1.S1_at--886--3791Chr04:5459650..5459674 (25 bp)
CTCGCTGCCAGACGCTGGGCAGTAC
LOC_Os04g10140
OsAffx.3762.1.S1_at--990--1871Chr04:5459569..5459593 (25 bp)
ACGTCGGCGACATAAACATAAAGCC
LOC_Os04g10140
OsAffx.3762.1.S1_at--567--4591Chr04:5459563..5459587 (25 bp)
GCGACATAAACATAAAGCCAAATTT
LOC_Os04g10140
OsAffx.3762.1.S1_at--191--2371Chr04:5459550..5459574 (25 bp)
AAAGCCAAATTTGCATCTGGATACT
LOC_Os04g10140
OsAffx.3762.1.S1_at--867--3111Chr04:5459543..5459567 (25 bp)
AATTTGCATCTGGATACTATCGTTC
LOC_Os04g10140
OsAffx.3762.1.S1_at--327--10731Chr04:5459540..5459564 (25 bp)
TTGCATCTGGATACTATCGTTCACC
LOC_Os04g10140
OsAffx.3762.1.S1_at--976--9891Chr04:5459529..5459553 (25 bp)
TACTATCGTTCACCTTCACGCATGA
LOC_Os04g10140
OsAffx.3762.1.S1_at--356--10151Chr04:5459526..5459550 (25 bp)
TATCGTTCACCTTCACGCATGATAG
LOC_Os04g10140
OsAffx.3762.1.S1_at--753--511Chr04:5459525..5459549 (25 bp)
ATCGTTCACCTTCACGCATGATAGC
LOC_Os04g10140
OsAffx.3762.1.S1_at--258--10531Chr04:5459521..5459545 (25 bp)
TTCACCTTCACGCATGATAGCCCAA
LOC_Os04g10140
OsAffx.3762.1.S1_at--116--1751Chr04:5459518..5459542 (25 bp)
ACCTTCACGCATGATAGCCCAATTT
LOC_Os04g10140
Target Sequence 
CTCGCTGCCAGACGCTGGGCAGTACCTTAGCCAGCAAGGAGGTGTTCACCTGGGCCAAGAGCAACAACCGGGGGCTACTC
CACGTCGGCGACATAAACATAAAGCCAAATTTGCATCTGGATACTATCGTTCACCTTCACGCATGATAGCCCAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis