Browse Element(s) Details


OsAffx.3805.1.S1_at

Description tigr:9632.m01494
TID=OsAffx.3805.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1662011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16580NANA4+8995634..8997707retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16590NANA4+8999915..9003718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16600NANA4+9005057..9014335retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16620OsAffx.3805.1.S1_at11/114+9018915..9019628hypothetical protein
LOC_Os04g16630OsAffx.15648.1.S1_at1/114+9021492..9028512retrotransposon protein, putative, unclassified
LOC_Os04g16640OsAffx.26046.1.S1_at11/114+9031793..9032749hypothetical protein
LOC_Os04g16649OsAffx.31869.1.S1_at8/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16649OsAffx.31869.5.S1_x_at2/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16649OsAffx.31869.3.S1_x_at1/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16649OsAffx.31869.3.S1_s_at1/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16660NANA4+9043913..9044311retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3805.1.S1_at--1084--7031Chr04:9019484..9019508 (25 bp)
GTAAACGTTGTGTGGACGCAGCCTC
LOC_Os04g16620
OsAffx.3805.1.S1_at--779--811Chr04:9019454..9019478 (25 bp)
ATGGTGTCTGGCTCCCTAGCAATTT
LOC_Os04g16620
OsAffx.3805.1.S1_at--1--1491Chr04:9019437..9019461 (25 bp)
AGCAATTTTGCATCCAGTCGGCGAG
LOC_Os04g16620
OsAffx.3805.1.S1_at--496--5932Chr11:15112357..15112376 (20 bp)
GAGCACCATGGTTCAGCCGAACTAG
NONE
OsAffx.3805.1.S1_at--347--7611Chr04:9019298..9019322 (25 bp)
GGGAATTCGACTGCGCGACAGCCGA
LOC_Os04g16620
OsAffx.3805.1.S1_at--152--5651Chr04:9019282..9019306 (25 bp)
GACAGCCGACAACTGGAGAGCTCAA
LOC_Os04g16620
OsAffx.3805.1.S1_at--1017--8051Chr04:9019268..9019292 (25 bp)
GGAGAGCTCAATCCGTTGACGACAA
LOC_Os04g16620
OsAffx.3805.1.S1_at--127--1371Chr04:9019230..9019254 (25 bp)
AGAGCAAGTAAAGGCCGCTCCGCTG
LOC_Os04g16620
OsAffx.3805.1.S1_at--1142--10071Chr04:9019191..9019215 (25 bp)
TATGGGCACGCTCTATACAAAGGCA
LOC_Os04g16620
OsAffx.3805.1.S1_at--477--7851Chr04:9019066..9019090 (25 bp)
GGTATGGTAAGTGCTTGCTCCTGCC
LOC_Os04g16620
OsAffx.3805.1.S1_at--471--8211Chr04:9018948..9018972 (25 bp)
GGCACCCGGGCAAATTCCAAGAAGA
LOC_Os04g16620
Target Sequence 
GTAAACGTTGTGTGGACGCAGCCTCTTGCGATGGTGTCTGGCTCCCTAGCAATTTTGCATCCAGTCGGCGAGCACCATGG
TTCAGCCGAACTAGGTGTTCGGCCGAACCCATCACGGCCCCAATCGGCCCCCCGTTCAGCAGCGCGATCCCTCTCCCCTC
GCCATGTGACCAAAACCAAAATTTGGGGGAATTCGACTGCGCGACAGCCGACAACTGGAGAGCTCAATCCGTTGACGACA
AGGCGGCTCTTCCAAGAGCAAGTAAAGGCCGCTCCGCTGCCCACCGAGCAATATATGGGCACGCTCTATACAAAGGCAAG
AGATGAGGTGCTCCACAAGTACACCACGCCCACCGCCACTCCATCAACCCCTAATGGGGACCCTTTTTGCATTCGGGGAG
TGCGAACTCCCGGCGGTGGGTATGGTAAGTGCTTGCTCCTGCCCTTGACACCATCGGAGAAGGAGGGGGCAACGGAGTCC
CGTAGCCCTCCACTTATGAATTGGAAGCGTCATTTGACGCCCCCTCCTATCATTACGGCACCCGGGCAAATTCCAAGAAG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis