Browse Element(s) Details


OsAffx.3839.1.S1_at

Description tigr:9632.m01885
TID=OsAffx.3839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2060011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20590Os.51342.1.S1_at11/114+11486003..11491107expressed protein
LOC_Os04g20600OsAffx.3839.1.S1_at11/114+11498791..11499543hypothetical protein
LOC_Os04g20610NANA4+11509474..11511740Zinc knuckle family protein
LOC_Os04g20620OsAffx.19542.3.S1_x_at7/114+11513697..11519353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20620OsAffx.21754.1.S1_x_at1/114+11513697..11519353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20620OsAffx.9949.1.S1_at1/114+11513697..11519353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20630Os.39942.1.S1_x_at8/114+11520117..11523264hypothetical protein
LOC_Os04g20630Os.39942.2.S1_a_at7/114+11520117..11523264hypothetical protein
LOC_Os04g20630Os.39942.2.S1_x_at3/114+11520117..11523264hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3839.1.S1_at--291--1211Chr04:11498827..11498851 (25 bp)
AGTTTTGCCCAGCAGGTTCGCCTTA
LOC_Os04g20600
OsAffx.3839.1.S1_at--497--6691Chr04:11498842..11499262 (25 bp)
GTTCGCCTTAGATGGTTTGCCTATG
LOC_Os04g20600
OsAffx.3839.1.S1_at--642--10291Chr04:11499253..11499277 (25 bp)
TTTGCCTATGGCGAAACCCTGAGGA
LOC_Os04g20600
OsAffx.3839.1.S1_at--436--2311Chr04:11499286..11499310 (25 bp)
AAAGGGTTCGCCATCATGTCCAAAG
LOC_Os04g20600
OsAffx.3839.1.S1_at--352--751Chr04:11499301..11499325 (25 bp)
ATGTCCAAAGGACCCACTGGCAAGT
LOC_Os04g20600
OsAffx.3839.1.S1_at--716--1951Chr04:11499316..11499340 (25 bp)
ACTGGCAAGTCTTCACTTCAGGCGA
LOC_Os04g20600
OsAffx.3839.1.S1_at--869--3411Chr04:11499357..11499381 (25 bp)
CAGAAGATGTGAGGCCTTCGCCAAG
LOC_Os04g20600
OsAffx.3839.1.S1_at--411--5951Chr04:11499405..11499429 (25 bp)
GAGAAGGCCGTTCACCAATATGGGT
LOC_Os04g20600
OsAffx.3839.1.S1_at--499--631Chr04:11499424..11499448 (25 bp)
ATGGGTCGGGCCCAAAAGCCCATGA
LOC_Os04g20600
OsAffx.3839.1.S1_at--1107--8511Chr04:11499467..11499491 (25 bp)
TGGACATTGTTTGCCCTCGTAAATG
LOC_Os04g20600
OsAffx.3839.1.S1_at--113--4191Chr04:11499480..11499504 (25 bp)
CCCTCGTAAATGTCCCTATCAGAAG
LOC_Os04g20600
Target Sequence 
AGTTTTGCCCAGCAGGTTCGCCTTAGATGGTTTGCCTATGGCGAAACCCTGAGGACGCAGCTGAAAGGGTTCGCCATCAT
GTCCAAAGGACCCACTGGCAAGTCTTCACTTCAGGCGAAGCAGGAAGGGTTCGCCAGAAGATGTGAGGCCTTCGCCAAGA
AGCCTAAGGATCAGAACGGCCCGAGAAGGCCGTTCACCAATATGGGTCGGGCCCAAAAGCCCATGAAAAGACCCCTTAAC
CAAATGGACATTGTTTGCCCTCGTAAATGTCCCTATCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis