Browse Element(s) Details


Os.51342.1.S1_at

Description gb:AK062600.1
DB_XREF= gi:32972618
TID=Os.51342.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-A03, full insert sequence.
FL= gb:AK062600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2059011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20570OsAffx.2606.1.S1_at2/114+11468311..11470385hypothetical protein
LOC_Os04g20570OsAffx.1436.1.S1_x_at1/114+11468311..11470385hypothetical protein
LOC_Os04g20590Os.51342.1.S1_at11/114+11486003..11491107expressed protein
LOC_Os04g20600OsAffx.3839.1.S1_at11/114+11498791..11499543hypothetical protein
LOC_Os04g20610NANA4+11509474..11511740Zinc knuckle family protein
LOC_Os04g20620OsAffx.19542.3.S1_x_at7/114+11513697..11519353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20620OsAffx.21754.1.S1_x_at1/114+11513697..11519353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20620OsAffx.9949.1.S1_at1/114+11513697..11519353retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51342.1.S1_at--308--10111Chr04:11486314..11486338 (25 bp)
TATGTCCAAAGGTATCTGGCACTGA
LOC_Os04g20590
Os.51342.1.S1_at--156--5591Chr04:11486289..11486313 (25 bp)
GAAATGCTGCCGTTGTACTGAGATA
LOC_Os04g20590
Os.51342.1.S1_at--923--211Chr04:11486231..11486255 (25 bp)
ATTTGTGCTCTTGAGTCTGTTGGCA
LOC_Os04g20590
Os.51342.1.S1_at--1002--6611Chr04:11486213..11486237 (25 bp)
GTTGGCAAATACATCTCTAGATCTA
LOC_Os04g20590
Os.51342.1.S1_at--124--6891Chr04:11486180..11486204 (25 bp)
GTATATCTACTTGTATGCTTGTTTC
LOC_Os04g20590
Os.51342.1.S1_at--702--7051Chr04:11486145..11486169 (25 bp)
GTAAGAGATGACTTTTCCTCCGTAG
LOC_Os04g20590
Os.51342.1.S1_at--803--10291Chr04:11486132..11486156 (25 bp)
TTTCCTCCGTAGTGATAGCTGACAT
LOC_Os04g20590
Os.51342.1.S1_at--17--10431Chr04:11486063..11486087 (25 bp)
TTACTGGTAATCTGTTCTCGTGCAC
LOC_Os04g20590
Os.51342.1.S1_at--325--6731Chr04:11486050..11486074 (25 bp)
GTTCTCGTGCACCATAGCCGAAATT
LOC_Os04g20590
Os.51342.1.S1_at--747--5571Chr04:11486031..11486055 (25 bp)
GAAATTACTTTCTGGATTGCCCTGA
LOC_Os04g20590
Os.51342.1.S1_at--172--7931Chr04:11486018..11486042 (25 bp)
GGATTGCCCTGATCTTTATCAAGGA
LOC_Os04g20590
Target Sequence 
TATGTCCAAAGGTATCTGGCACTGAGAAATGCTGCCGTTGTACTGAGATAACTATGCAAAATCTATGTAGAAGAGAAATG
GGGATTTGTGCTCTTGAGTCTGTTGGCAAATACATCTCTAGATCTAGTGTGAATGTATATCTACTTGTATGCTTGTTTCT
TAGCAAATTGTAAGAGATGACTTTTCCTCCGTAGTGATAGCTGACATCATGGCTGGGGACGTTCAGTTCGTGCTTTATCG
ACGTTCATGAATTACTGGTAATCTGTTCTCGTGCACCATAGCCGAAATTACTTTCTGGATTGCCCTGATCTTTATCAAGG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis