Browse Element(s) Details


OsAffx.3899.1.S1_at

Description tigr:9632.m02449
TID=OsAffx.3899.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2608011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26030Os.40855.4.S1_x_at6/114+15117017..15121400hypothetical protein
LOC_Os04g26030Os.40855.2.S1_x_at4/114+15117017..15121400hypothetical protein
LOC_Os04g26030Os.40855.4.S1_at1/114+15117017..15121400hypothetical protein
LOC_Os04g26030Os.40360.1.S1_x_at1/114+15117017..15121400hypothetical protein
LOC_Os04g26040NANA4+15123934..15126681transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26050OsAffx.13978.1.S1_at10/114+15128724..15129068hypothetical protein
LOC_Os04g26050OsAffx.13978.1.S1_x_at10/114+15128724..15129068hypothetical protein
LOC_Os04g26060NANA4+15131598..15134930transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26070Os.47463.1.S1_x_at6/114+15138136..15141797transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26070Os.14491.2.S1_x_at4/114+15138136..15141797transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26080OsAffx.3899.1.S1_at11/114+15142461..15144494hypothetical protein
LOC_Os04g26090OsAffx.3891.1.S1_at7/114+15157595..15158661hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3899.1.S1_at--764--4591Chr04:15142827..15142851 (25 bp)
GCGAAGACCCTTGATGCTTGGATGT
LOC_Os04g26080
OsAffx.3899.1.S1_at--39--3631Chr04:15142836..15142860 (25 bp)
CTTGATGCTTGGATGTTGGGCGCCA
LOC_Os04g26080
OsAffx.3899.1.S1_at--656--10691Chr04:15142851..15142875 (25 bp)
TTGGGCGCCAATGCTAAGGCCTATG
LOC_Os04g26080
OsAffx.3899.1.S1_at--788--7751Chr04:15144113..15144134 (22 bp)
GGTGATGCAACCTCTTGTAATTTCT
LOC_Os04g26080
OsAffx.3899.1.S1_at--1066--6331Chr04:15144141..15144165 (25 bp)
GATGCTATCCTTTGCAAACCTTTGC
LOC_Os04g26080
OsAffx.3899.1.S1_at--383--5131Chr04:15144154..15144178 (25 bp)
GCAAACCTTTGCTCATTTTACCATG
LOC_Os04g26080
OsAffx.3899.1.S1_at--889--8911Chr04:15144209..15144233 (25 bp)
TGAGCCCTTTTTCAGTCGCCATTTC
LOC_Os04g26080
OsAffx.3899.1.S1_at--708--3451Chr04:15144221..15144245 (25 bp)
CAGTCGCCATTTCAGCACTAGTGTT
LOC_Os04g26080
OsAffx.3899.1.S1_at--720--6751Chr04:15144243..15144265 (23 bp)
GTTCAGAGCAACTTCGTGCATGGCG
LOC_Os04g26080
OsAffx.3899.1.S1_at--853--3611Chr04:15144386..15144410 (25 bp)
CTTCGACGAAGATACCCTGAGGATT
LOC_Os04g26080
OsAffx.3899.1.S1_at--472--8191Chr04:15144422..15144446 (25 bp)
GGAAGAAGGCGCCTATCACAAGAGC
LOC_Os04g26080
Target Sequence 
GCGAAGACCCTTGATGCTTGGATGTTGGGCGCCAATGCTAAGGCCTATGGCAATGAGGTGATGCAACCTCTTGTAATTTC
TACAGAAGATGCTATCCTTTGCAAACCTTTGCTCATTTTACCATGTTGGAGTATTGATTACTTGATGGGAGAGGATGAGC
CCTTTTTCAGTCGCCATTTCAGCACTAGTGTTCAGAGCAACTTCGTGCATGGCGAGCTTTACACCCTCTTCGACGAAGAT
ACCCTGAGGATTTGGGATGACATGGAAGAAGGCGCCTATCACAAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis