Browse Element(s) Details


OsAffx.3923.1.S1_at

Description tigr:9632.m02638
TID=OsAffx.3923.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=B3 DNA binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2796011/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27910NANA4+16295775..16298995hypothetical protein
LOC_Os04g27930NANA4+16302434..16303087hypothetical protein
LOC_Os04g27950Os.54006.1.S1_at11/114+16307599..16310334expressed protein
LOC_Os04g27960OsAffx.3923.1.S1_at11/114+16318382..16322121B3 DNA binding domain containing protein
LOC_Os04g27969NANA4+16329668..16330075NA
LOC_Os04g27980Os.54178.1.S1_at6/114+16332670..16333988Glycosyl hydrolases family 18 protein
LOC_Os04g27990OsAffx.3924.1.S1_at11/114+16342890..16343398B3 DNA binding domain containing protein
LOC_Os04g28000OsAffx.26193.1.S1_at11/114+16344903..16346252B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3923.1.S1_at--1011--3051Chr04:16319468..16319492 (25 bp)
AATCAGTGTTTTTGGGCCCAATGGA
LOC_Os04g27960
OsAffx.3923.1.S1_at--187--7571Chr04:16319455..16319479 (25 bp)
GGGCCCAATGGACGCCAGAAAGATT
LOC_Os04g27960
OsAffx.3923.1.S1_at--1023--1051Chr04:16319423..16319445 (23 bp)
AGGGCATCAGCATTTATCAAGGTAC
LOC_Os04g27960
OsAffx.3923.1.S1_at--109--2131Chr04:16319266..16319290 (25 bp)
ACAGGAAGCACCTTCTTTTTCTAGA
LOC_Os04g27960
OsAffx.3923.1.S1_at--185--1291Chr04:16319106..16319130 (25 bp)
AGATCTGTCTACGAGATTGGACCGC
LOC_Os04g27960
OsAffx.3923.1.S1_at--986--11Chr04:16319091..16319115 (25 bp)
ATTGGACCGCGCTCTTGGATAAAGA
LOC_Os04g27960
OsAffx.3923.1.S1_at--487--10751Chr04:16318653..16319069 (25 bp)
TTGAAAGATGCATTCTCTCTCTCGC
LOC_Os04g27960
OsAffx.3923.1.S1_at--138--5171Chr04:16318630..16318654 (25 bp)
GCAAGGACCTTCTGCGAGTCGATCG
LOC_Os04g27960
OsAffx.3923.1.S1_at--845--1831Chr04:16318582..16318606 (25 bp)
ACGCTGATGATGATCGACACGACAT
LOC_Os04g27960
OsAffx.3923.1.S1_at--406--9851Chr04:16318492..16318516 (25 bp)
TACAAGGACGCCTGCTACCTGCTGG
LOC_Os04g27960
OsAffx.3923.1.S1_at--765--1011Chr04:16318453..16318477 (25 bp)
AGGTTCTGCGAGGACAACGGCGTCA
LOC_Os04g27960
Target Sequence 
AATCAGTGTTTTTGGGCCCAATGGACGCCAGAAAGATTTCAAGGCAAAGGGCATCAGCATTTATCAAGGTACTGGAGAGC
AACAGGAAGCACCTTCTTTTTCTAGAAGGAAATGTAATAACAAGAAGAAGAGTAGATTTGGTGAAGATGATGGAAACCAA
CAGGAAATGCCTTGCAGTAGAAAGGGCAGCGGCAACAAAGGGAGAACAAGTGACAGAGAAACAAAAAGGATGAGAAAAAC
CAGATCTGTCTACGAGATTGGACCGCGCTCTTGGATAAAGAAGGAGATCAATGAATATGTTCTTGAAAGATGCATTCTCT
CTCTCGCAAGGACCTTCTGCGAGTCGATCGGTCTCGTAGAGGAGAGCAGCATCACGCTGATGATGATCGACACGACATCA
ACGCAAGGAGATCAAGGAGGAAGCAGCAGCAGCAGCAGATCATGGGAGGTGACCGGGCGTCGGTACAAGGACGCCTGCTA
CCTGCTGGGAGCCGGCTGGAGGAGGTTCTGCGAGGACAACGGCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis