Browse Element(s) Details


OsAffx.3959.1.S1_at

Description tigr:9632.m02924
TID=OsAffx.3959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3082011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30780Os.8580.1.S1_at11/114+18213820..18218312Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g30790Os.22695.1.S1_s_at11/114+18219938..18223014expressed protein
LOC_Os04g30800NANA4+18226935..18230195ER lumen protein retaining receptor, putative
LOC_Os04g30810NANA4+18232182..18233825F-box domain containing protein
LOC_Os04g30820OsAffx.3959.1.S1_at11/114+18236447..18237332hypothetical protein
LOC_Os04g30830OsAffx.26260.1.S1_at10/114+18238809..18240694F-box domain containing protein
LOC_Os04g30840OsAffx.14056.1.S1_at11/114+18242556..18242876hypothetical protein
LOC_Os04g30850OsAffx.26261.1.S1_at11/114+18243859..18244737hypothetical protein
LOC_Os04g30860OsAffx.25216.1.S1_x_at11/114+18250432..18255970Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g30860Os.33624.3.S1_x_at9/114+18250432..18255970Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g30870OsAffx.25217.2.S1_x_at10/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.25217.1.S1_x_at8/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.29607.3.S1_x_at1/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.29607.5.S1_x_at1/114+18256224..18264737transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3959.1.S1_at--543--8631Chr04:18237161..18237185 (25 bp)
TGGGTGAGAATCTTGGCCCGCCGCT
LOC_Os04g30820
OsAffx.3959.1.S1_at--858--10851Chr04:18237149..18237173 (25 bp)
TTGGCCCGCCGCTGGCACGATTTTG
LOC_Os04g30820
OsAffx.3959.1.S1_at--726--4711Chr04:18237139..18237163 (25 bp)
GCTGGCACGATTTTGGCGAGGTACC
LOC_Os04g30820
OsAffx.3959.1.S1_at--1100--3291Chr04:18237134..18237158 (25 bp)
CACGATTTTGGCGAGGTACCACAAA
LOC_Os04g30820
OsAffx.3959.1.S1_at--572--10391Chr04:18237129..18237153 (25 bp)
TTTTGGCGAGGTACCACAAATGGAG
LOC_Os04g30820
OsAffx.3959.1.S1_at--521--6031Chr04:18236672..18236696 (25 bp)
GAGATGTGGCAGAACCACTGGATTA
LOC_Os04g30820
OsAffx.3959.1.S1_at--1161--10211Chr04:18236595..18236619 (25 bp)
TTTGGCTAGAGCTGAAGAAGACGAT
LOC_Os04g30820
OsAffx.3959.1.S1_at--1055--3991Chr04:18236525..18236549 (25 bp)
CGCTGGTGGGCCTCGCAAATGCTTG
LOC_Os04g30820
OsAffx.3959.1.S1_at--373--8431Chr04:18236517..18236541 (25 bp)
GGCCTCGCAAATGCTTGCCGATGAG
LOC_Os04g30820
OsAffx.3959.1.S1_at--1103--6131Chr04:18236479..18236503 (25 bp)
GAGGGTGTCGGCAACCTGACAGATC
LOC_Os04g30820
OsAffx.3959.1.S1_at--538--7711Chr04:18236477..18236501 (25 bp)
GGGTGTCGGCAACCTGACAGATCAA
LOC_Os04g30820
Target Sequence 
TGGGTGAGAATCTTGGCCCGCCGCTGGCACGATTTTGGCGAGGTACCACAAATGGAGGTGTGGAGATGTGGCAGAACCAC
TGGATTAGCATTCGGGGGGTTGTCATGGGAGATCAAGGAGGAGAGGTCGGTCGGGGGGATTTGGCTAGAGCTGAAGAAGA
CGATGAGATGTCGACGGATTTGGCGGGGATTCGGGATGAGAGAGGGAGCCGCTGGTGGGCCTCGCAAATGCTTGCCGATG
AGGGGAGGTGGTGGGGAGGGTGTCGGCAACCTGACAGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis