Browse Element(s) Details


OsAffx.3993.1.S1_at

Description tigr:9632.m03279
TID=OsAffx.3993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3416011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34110NANA4+20486664..20490976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34120OsAffx.3992.1.S1_at11/114+20492641..20493051hypothetical protein
LOC_Os04g34130OsAffx.26319.1.S1_at11/114+20500825..20501776hypothetical protein
LOC_Os04g34140Os.9877.1.S1_at11/114+20503478..20505235U-box domain containing protein, expressed
LOC_Os04g34150OsAffx.14125.1.S1_at11/114+20511553..20511906hypothetical protein
LOC_Os04g34160OsAffx.3993.1.S1_at11/114+20515104..20516460hypothetical protein
LOC_Os04g34160OsAffx.25067.1.S1_at1/114+20515104..20516460hypothetical protein
LOC_Os04g34170Os.25734.2.S1_a_at11/114+20520646..20522441transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g34180OsAffx.14126.1.S1_at10/114+20525809..20529890hypothetical protein
LOC_Os04g34190NANA4+20530951..20535317retrotransposon protein, putative, unclassified
LOC_Os04g34200OsAffx.14127.1.S1_at9/114+20536849..20537760hypothetical protein
LOC_Os04g34200OsAffx.14127.1.S1_x_at9/114+20536849..20537760hypothetical protein
LOC_Os04g34209NANA4+20539184..20539763NA
LOC_Os04g34220NANA4+20541428..20542663hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3993.1.S1_at--690--8811Chr04:20515138..20515162 (25 bp)
TGTTGGTGCCGGCTTCTGCTCTGCC
LOC_Os04g34160
OsAffx.3993.1.S1_at--374--5631Chr04:20515813..20515837 (25 bp)
GACACAATGCAATCTCTTTATTGGA
LOC_Os04g34160
OsAffx.3993.1.S1_at--237--10231Chr04:20515831..20515853 (23 bp)
TATTGGATTATTGATGCTAGTTGGC
LOC_Os04g34160
OsAffx.3993.1.S1_at--328--6331Chr04:20515843..20516314 (25 bp)
GATGCTAGTTGGCAATGCACATTGG
LOC_Os04g34160
OsAffx.3993.1.S1_at--122--9031Chr04:20516305..20516329 (25 bp)
TGCACATTGGACACAGCACTGTATT
LOC_Os04g34160
OsAffx.3993.1.S1_at--218--5111Chr04:20516320..20516344 (25 bp)
GCACTGTATTTGGATGCCATCTCAT
LOC_Os04g34160
OsAffx.3993.1.S1_at--1001--9191Chr04:20516334..20516358 (25 bp)
TGCCATCTCATCACTATCGTGGAAC
LOC_Os04g34160
OsAffx.3993.1.S1_at--205--3531Chr04:20516358..20516382 (25 bp)
CATAAGTAATGTGCCAAAGCTACAG
LOC_Os04g34160
OsAffx.3993.1.S1_at--318--2691Chr04:20516374..20516398 (25 bp)
AAGCTACAGCAAAGTCTAATTGAAC
LOC_Os04g34160
OsAffx.3993.1.S1_at--322--10751Chr04:20516393..20516417 (25 bp)
TTGAACAGATGCTGAGCCATAATAA
LOC_Os04g34160
OsAffx.3993.1.S1_at--91--8931Chr04:20516405..20516429 (25 bp)
TGAGCCATAATAATGAGATCCCCGG
LOC_Os04g34160
Target Sequence 
TGTTGGTGCCGGCTTCTGCTCTGCCCGGCGTCCTCGTCGGTTGGCCGCGACGCGTGCAAGATGGGCGGGATGGAGGAGGT
CGAGGCCGCATGCCAAGGCAAGGCGGCGCCGGAGAGTCGGAGCTGCTTCGCTGTAGGGGTGCGACGAAGCTTGGCAATGA
TGACACAATGCAATCTCTTTATTGGATTATTGATGCTAGTTGGCAATGCACATTGGACACAGCACTGTATTTGGATGCCA
TCTCATCACTATCGTGGAACATAAGTAATGTGCCAAAGCTACAGCAAAGTCTAATTGAACAGATGCTGAGCCATAATAAT
GAGATCCCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis