Browse Element(s) Details


OsAffx.4101.1.S1_at

Description tigr:9632.m04396
TID=OsAffx.4101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phytochelatin synthetase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4570011/11COBRA-like protein 6 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45670Os.9278.1.S1_s_at11/114+26796479..26800409Variant SH3 domain containing protein, expressed
LOC_Os04g45690Os.5890.1.S1_at11/114+26808184..26810412B-box zinc finger family protein, expressed
LOC_Os04g45700OsAffx.4101.1.S1_at11/114+26813732..26815736COBRA-like protein 6 precursor, putative, expressed
LOC_Os04g45710OsAffx.4102.1.S1_at9/114+26816354..26821348hypothetical protein
LOC_Os04g45720Os.18249.1.S1_at10/114+26824892..26829817aldehyde dehydrogenase family protein, expressed
LOC_Os04g45730Os.48817.1.A1_at10/114+26839293..26841021Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009825biological_processmultidimensional cell growth
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0010215biological_processcellulose microfibril organization
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009897cellular_componentexternal side of plasma membrane
GO:0009930cellular_componentlongitudinal side of cell surface (sensu Magnoliophyta)
GO:0031225cellular_componentanchored to membrane
GO:0046658cellular_componentanchored to plasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4101.1.S1_at--841--2111Chr04:26815172..26815196 (25 bp)
ACATGTGCCCAGTCCGGGTGCACTG
LOC_Os04g45700
OsAffx.4101.1.S1_at--812--7351Chr04:26815201..26815225 (25 bp)
GTGAAGATCAGCTACCGTGAGTACT
LOC_Os04g45700
OsAffx.4101.1.S1_at--1092--1871Chr04:26815240..26815264 (25 bp)
ACGATCACCAACTACAACCAGGTCA
LOC_Os04g45700
OsAffx.4101.1.S1_at--683--1431Chr04:26815265..26815289 (25 bp)
AGAACTACAGCGACTGGAACCTGGT
LOC_Os04g45700
OsAffx.4101.1.S1_at--524--8791Chr04:26815325..26815349 (25 bp)
TGTTCAGCTTCAACTACCAGCCTCT
LOC_Os04g45700
OsAffx.4101.1.S1_at--11--9991Chr04:26815339..26815363 (25 bp)
TACCAGCCTCTCATCGAGTACGGCA
LOC_Os04g45700
OsAffx.4101.1.S1_at--929--6071Chr04:26815354..26815461 (25 bp)
GAGTACGGCACCCTGAACGACACGG
LOC_Os04g45700
OsAffx.4101.1.S1_at--734--711Chr04:26815494..26815518 (25 bp)
ATGATGCTGCAGGACGGTAATGTGC
LOC_Os04g45700
OsAffx.4101.1.S1_at--370--5691Chr04:26815551..26815575 (25 bp)
GACTTCACCTTCTCCGGTGGATGGG
LOC_Os04g45700
OsAffx.4101.1.S1_at--356--991Chr04:26815587..26815611 (25 bp)
AGGGTGTACTTCGACGGCCACGAGT
LOC_Os04g45700
OsAffx.4101.1.S1_at--890--5191Chr04:26815682..26815706 (25 bp)
GCAATTGATCGCCAGCTCGTGCTTG
LOC_Os04g45700
Target Sequence 
ACATGTGCCCAGTCCGGGTGCACTGGCACGTGAAGATCAGCTACCGTGAGTACTGGAGGGTGAAGGTGACGATCACCAAC
TACAACCAGGTCAAGAACTACAGCGACTGGAACCTGGTGGTGCAGCACCCGAACCTCCGGAGCCTGACGCAGCTGTTCAG
CTTCAACTACCAGCCTCTCATCGAGTACGGCACCCTGAACGACACGGGGATGTTCTGGGGGATCCAGTACTACAACGAGA
TGATGCTGCAGGACGGTAATGTGCAGACGGAGATGATACTGAAGAAGGACAAGAGCGACTTCACCTTCTCCGGTGGATGG
GCGTTCCCGAGGAGGGTGTACTTCGACGGCCACGAGTGCGTCATGCCACCGCCGGATCAGTACCCCTTGCTGCCCAACGG
AGGCCCGGACTCGCGCGTCTCGGCGGCGCAATTGATCGCCAGCTCGTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis