Browse Element(s) Details


OsAffx.4102.1.S1_at

Description tigr:9632.m04397
TID=OsAffx.4102.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g457109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45670Os.9278.1.S1_s_at11/114+26796479..26800409Variant SH3 domain containing protein, expressed
LOC_Os04g45690Os.5890.1.S1_at11/114+26808184..26810412B-box zinc finger family protein, expressed
LOC_Os04g45700OsAffx.4101.1.S1_at11/114+26813732..26815736COBRA-like protein 6 precursor, putative, expressed
LOC_Os04g45710OsAffx.4102.1.S1_at9/114+26816354..26821348hypothetical protein
LOC_Os04g45720Os.18249.1.S1_at10/114+26824892..26829817aldehyde dehydrogenase family protein, expressed
LOC_Os04g45730Os.48817.1.A1_at10/114+26839293..26841021Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4102.1.S1_at--344--5651NONE
GACAGTTGAAGGAACAATCTCAGCT
NONE
OsAffx.4102.1.S1_at--654--5511Chr04:26819320..26819344 (25 bp)
GAACAATCTCAGCTGTAGAATCAAC
LOC_Os04g45710
OsAffx.4102.1.S1_at--1154--2511Chr04:26819342..26819366 (25 bp)
AACTAAGGACATCAAGTTGGACACC
LOC_Os04g45710
OsAffx.4102.1.S1_at--905--5411Chr04:26819376..26819396 (21 bp)
GAACCACTACAGATGAAAAGTCATG
LOC_Os04g45710
OsAffx.4102.1.S1_at--1030--1411Chr04:26819634..26819658 (25 bp)
AGAAACCAAAAGTCAGACCACTGAA
LOC_Os04g45710
OsAffx.4102.1.S1_at--564--7051Chr04:26820119..26820143 (25 bp)
GTAACAAGGAATTCACAATCAGAGA
LOC_Os04g45710
OsAffx.4102.1.S1_at--799--791Chr04:26820145..26820169 (25 bp)
ATGTGGAAGTGACAGAATTGACTCT
LOC_Os04g45710
OsAffx.4102.1.S1_at--453--2911Chr04:26820482..26820505 (24 bp)
AAGGATGTCATAGATTGCAGGCTCA
LOC_Os04g45710
OsAffx.4102.1.S1_at--522--9051Chr04:26820496..26820520 (25 bp)
TGCAGGCTCAAGTTACAGGGAATAC
LOC_Os04g45710
OsAffx.4102.1.S1_at--185--5671NONE
GACATGTGATCTCATTACCTCCAGG
NONE
OsAffx.4102.1.S1_at--15--791Chr04:26821036..26821056 (21 bp)
ATGTGATCTCATTACCTCCAGGATT
LOC_Os04g45710
Target Sequence 
GACAGTTGAAGGAACAATCTCAGCTGTAGAATCAACTAAGGACATCAAGTTGGACACCAAGAAAAAAGAACCACTACAGA
TGAAAAGTCATGAAGAAGTACAAGATGAAAAAAGAAGAAGCCAAGAATCAGATAAGAGCAATATTATGGCAAAACATATT
AAAGAAACCAAAAGTCAGACCACTGAAGTTGTTCCAGGGGCTGATAGAACAAAGGCTGAAGTAACAAGGAATTCACAATC
AGAGAGATGTGGAAGTGACAGAATTGACTCTGAAGAATTAAGAAGAAACAATACAGTTGAAGGATGTCATAGATTGCAGG
CTCAAGTTACAGGGAATACACAATCAAAGACATGTGATCTCATTACCTCCAGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis