Browse Element(s) Details


OsAffx.4109.1.S1_at

Description tigr:9632.m04517
TID=OsAffx.4109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4684011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46770OsAffx.8513.1.S1_s_at1/114+27511493..27511961transposon protein, putative, unclassified
LOC_Os04g46770OsAffx.10756.1.S1_x_at1/114+27511493..27511961transposon protein, putative, unclassified
LOC_Os04g46780Os.52343.1.S1_at11/114+27513652..27516700MSP domain containing protein, expressed
LOC_Os04g46780Os.51114.1.S1_x_at9/114+27513652..27516700MSP domain containing protein, expressed
LOC_Os04g46790OsAffx.26490.1.S1_at11/114+27517388..27518059hypothetical protein
LOC_Os04g46800NANA4+27519131..27519412hypothetical protein
LOC_Os04g46810Os.47380.1.S1_at11/114+27520967..27521716Cortical cell delineating protein precursor, putative, expressed
LOC_Os04g46820NANA4+27524246..27524641Cortical cell delineating protein precursor, putative
LOC_Os04g46830OsAffx.26492.1.S1_at11/114+27534287..27535141Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g46830OsAffx.26492.1.S1_s_at11/114+27534287..27535141Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g46840OsAffx.4109.1.S1_at11/114+27536212..27537433hypothetical protein
LOC_Os04g46850OsAffx.26493.1.S1_at11/114+27540099..27540606hypothetical protein
LOC_Os04g46860Os.20826.1.S1_at11/114+27545574..27548230GRAS family transcription factor containing protein, expressed
LOC_Os04g46870OsAffx.26494.1.S1_at11/114+27552933..27554218hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4109.1.S1_at--618--2891Chr04:27537037..27537060 (24 bp)
AAGGTGTCAAGTGTGGAGCCGCAAC
LOC_Os04g46840
OsAffx.4109.1.S1_at--528--1071Chr04:27537045..27537069 (25 bp)
AGTGTGGAGCCGCAACGACCCGTAC
LOC_Os04g46840
OsAffx.4109.1.S1_at--319--5811Chr04:27537061..27537085 (25 bp)
GACCCGTACGCAGATCGGTTACAAC
LOC_Os04g46840
OsAffx.4109.1.S1_at--35--7251Chr04:27537162..27537186 (25 bp)
GTCCGCAAGCCTCTGTGCCGCTATA
LOC_Os04g46840
OsAffx.4109.1.S1_at--951--311Chr04:27537184..27537208 (25 bp)
ATACGCGCAGCGTGCGTCGTCAAGT
LOC_Os04g46840
OsAffx.4109.1.S1_at--56--4151Chr04:27537231..27537255 (25 bp)
CGCGGACAGGGTGCAGTGACATCAA
LOC_Os04g46840
OsAffx.4109.1.S1_at--870--7311Chr04:27537241..27537265 (25 bp)
GTGCAGTGACATCAAGACCTTTTCG
LOC_Os04g46840
OsAffx.4109.1.S1_at--640--371Chr04:27537251..27537275 (25 bp)
ATCAAGACCTTTTCGTACGCCGATT
LOC_Os04g46840
OsAffx.4109.1.S1_at--95--4491Chr04:27537269..27537293 (25 bp)
GCCGATTCCCAAACTCAACGGTGTT
LOC_Os04g46840
OsAffx.4109.1.S1_at--290--10451Chr04:27537311..27537335 (25 bp)
TTACCCGGGCGTTTCGCTGTATCAT
LOC_Os04g46840
OsAffx.4109.1.S1_at--1037--4131Chr04:27537325..27537349 (25 bp)
CGCTGTATCATCTGTTGTACGTGAA
LOC_Os04g46840
Target Sequence 
AAGGTGTCAAGTGTGGAGCCGCAACGACCCGTACGCAGATCGGTTACAACCCCCAATCCTCCACTGTCTCTGGACTCTCT
CTGCGTCCGCTTCTCCAACCGCCCTCGCGGTCGCGGCGCCTCCCCCGTCCGCAAGCCTCTGTGCCGCTATACGCGCAGCG
TGCGTCGTCAAGTCTCCCTCTGGCGTCGCGCATGGCGCGGACAGGGTGCAGTGACATCAAGACCTTTTCGTACGCCGATT
CCCAAACTCAACGGTGTTCCCTCCTTCCTACGGTCTTACCCGGGCGTTTCGCTGTATCATCTGTTGTACGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis