Browse Element(s) Details


OsAffx.4127.1.S1_at

Description tigr:9632.m04778
TID=OsAffx.4127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4924011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49230OsAffx.26536.1.S1_at11/114+29147940..29148821B3 DNA binding domain containing protein
LOC_Os04g49240OsAffx.4127.1.S1_at11/114+29166710..29167220expressed protein
LOC_Os04g49250Os.54071.1.S1_at11/114+29172031..29173632UDP-glucose/GDP-mannose dehydrogenase family, central domain containing protein, expressed
LOC_Os04g49250OsAffx.17756.1.S1_x_at1/114+29172031..29173632UDP-glucose/GDP-mannose dehydrogenase family, central domain containing protein, expressed
LOC_Os04g49260Os.55252.1.S1_at8/114+29189821..29190528copper-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4127.1.S1_at--1083--9311Chr04:29166816..29166840 (25 bp)
TCCCTCACCTTAGATTCGGCAGTAG
LOC_Os04g49240
OsAffx.4127.1.S1_at--1145--4291Chr04:29166823..29166847 (25 bp)
CCTTAGATTCGGCAGTAGTGGTGAA
LOC_Os04g49240
OsAffx.4127.1.S1_at--421--7691Chr04:29166902..29166926 (25 bp)
GGGTATCTCGTTATAGATCTGGCGG
LOC_Os04g49240
OsAffx.4127.1.S1_at--255--9651Chr04:29166930..29166954 (25 bp)
TCAGTGACGATAACGATGGAGGCAA
LOC_Os04g49240
OsAffx.4127.1.S1_at--121--5191Chr04:29166951..29167036 (25 bp)
GCAAGGTTGATCTAGCACGGCTCGA
LOC_Os04g49240
OsAffx.4127.1.S1_at--184--1511Chr04:29167025..29167049 (25 bp)
AGCACGGCTCGAGGATGGCAAAGAC
LOC_Os04g49240
OsAffx.4127.1.S1_at--240--4631Chr04:29167054..29167078 (25 bp)
GCGATGGTGGTGGTTATTCAACAAA
LOC_Os04g49240
OsAffx.4127.1.S1_at--934--10491Chr04:29167070..29167094 (25 bp)
TTCAACAAAGCTCGGTGATGGCGAT
LOC_Os04g49240
OsAffx.4127.1.S1_at--787--7371Chr04:29167099..29167123 (25 bp)
GTGACTGGAGAGAACTGCTCGATGA
LOC_Os04g49240
OsAffx.4127.1.S1_at--1041--9091Chr04:29167114..29167138 (25 bp)
TGCTCGATGAATGCGACACCGGCAT
LOC_Os04g49240
OsAffx.4127.1.S1_at--833--10711Chr04:29167166..29167190 (25 bp)
TTGCATGTTCCTATTCAGGGCATCT
LOC_Os04g49240
Target Sequence 
TCCCTCACCTTAGATTCGGCAGTAGTGGTGAAGGGGAGCAGCGGCGGGGCTCAGCGACACAGAGGATGGGTGGTAGCAGA
AGGGAGGGGTATCTCGTTATAGATCTGGCGGGGGTCAGTGACGATAACGATGGAGGCAAGGTTGATCTAGCACGGCTCGA
GGATGGCAAAGACGGTGGCGATGGTGGTGGTTATTCAACAAAGCTCGGTGATGGCGATGAGGGTGACTGGAGAGAACTGC
TCGATGAATGCGACACCGGCATCCTGCTGCCGGGGTTTAATATATTGGTTTGCATGTTCCTATTCAGGGCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis