Browse Element(s) Details


OsAffx.4235.1.S1_at

Description tigr:9633.m00157
TID=OsAffx.4235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0238010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02340NANA5+730468..735045retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g02350OsAffx.14502.1.S1_at11/115+737050..741830Endonuclease/Exonuclease/phosphatase family protein
LOC_Os05g02360OsAffx.14503.1.S1_at11/115+749242..749484hypothetical protein
LOC_Os05g02370NANA5+751337..751648hypothetical protein
LOC_Os05g02380OsAffx.4235.1.S1_at10/115+755555..757894hypothetical protein
LOC_Os05g02380Os.53712.1.S1_x_at1/115+755555..757894hypothetical protein
LOC_Os05g02390Os.55911.1.S1_at11/115+761238..762121Zinc finger, C2H2 type family protein, expressed
LOC_Os05g02400OsAffx.4236.1.S1_at10/115+766883..769735RNA recognition motif family protein, expressed
LOC_Os05g02410Os.10942.2.S1_x_at11/115+769915..772696expressed protein
LOC_Os05g02410OsAffx.26693.1.S1_at1/115+769915..772696expressed protein
LOC_Os05g02420Os.17902.1.S1_at11/115+779253..781382expressed protein
LOC_Os05g02420OsAffx.5031.3.S1_x_at1/115+779253..781382expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4235.1.S1_at--494--4831Chr05:755595..755619 (25 bp)
GCTTTTCCTCAGAGTTGGACGACAA
LOC_Os05g02380
OsAffx.4235.1.S1_at--322--3431Chr05:755604..755628 (25 bp)
CAGAGTTGGACGACAAGACGGCGAC
LOC_Os05g02380
OsAffx.4235.1.S1_at--268--3971Chr05:755640..755664 (25 bp)
CGGTGCTGGACCTCAGGCCGACGCA
LOC_Os05g02380
OsAffx.4235.1.S1_at--1090--8131Chr05:755734..755758 (25 bp)
GGACACGAGCGCCTACGACGACATG
LOC_Os05g02380
OsAffx.4235.1.S1_at--467--9931Chr05:755747..755771 (25 bp)
TACGACGACATGCAGGTTCCACCAC
LOC_Os05g02380
OsAffx.4235.1.S1_at--944--4691Chr05:755786..755810 (25 bp)
GCGGCCAACTGGAAGCGGGACGTGC
LOC_Os05g02380
OsAffx.4235.1.S1_at--769--8111NONE
GGACGTGCAGGATACTGCGTCAATG
NONE
OsAffx.4235.1.S1_at--354--9151Chr05:756564..756588 (25 bp)
TGCGTCAATGAAATCAGCTATCTAT
LOC_Os05g02380
OsAffx.4235.1.S1_at--787--10151Chr05:756582..756606 (25 bp)
TATCTATAGTGCTACAGGATCTAAC
LOC_Os05g02380
OsAffx.4235.1.S1_at--656--7311Chr05:756590..756614 (25 bp)
GTGCTACAGGATCTAACTTCGATGA
LOC_Os05g02380
OsAffx.4235.1.S1_at--1067--7951Chr05:756598..756622 (25 bp)
GGATCTAACTTCGATGATTTTGTTA
LOC_Os05g02380
Target Sequence 
GCTTTTCCTCAGAGTTGGACGACAAGACGGCGACGGCGACGGCGGCGGTGCTGGACCTCAGGCCGACGCAGCCGGGGGAG
AAGCCGCGCGTGGTGGTGCTCAGGACGGGGTGGGCGGTGTGCAGGTTCCTCAAGGACGTGGACACGAGCGCCTACGACGA
CATGCAGGTTCCACCACCGCCGCCGTCGCCGGCGGCCAACTGGAAGCGGGACGTGCAGGATACTGCGTCAATGAAATCAG
CTATCTATAGTGCTACAGGATCTAACTTCGATGATTTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis