Browse Element(s) Details


OsAffx.4263.1.S1_at

Description tigr:9633.m00579
TID=OsAffx.4263.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0656011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06530Os.24178.1.A1_at10/115+3339204..3342505expressed protein
LOC_Os05g06530Os.24178.1.A1_x_at9/115+3339204..3342505expressed protein
LOC_Os05g06530Os.11641.1.S1_at7/115+3339204..3342505expressed protein
LOC_Os05g06540Os.24080.1.A1_at1/115+3347106..3351035hypothetical protein
LOC_Os05g06540Os.38041.1.S1_at1/115+3347106..3351035hypothetical protein
LOC_Os05g06550NANA5+3357830..3358280hypothetical protein
LOC_Os05g06560OsAffx.4263.1.S1_at11/115+3360749..3362292hypothetical protein
LOC_Os05g06570NANA5+3370852..3373898retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g06580NANA5+3376989..3378819retrotransposon protein, putative, unclassified
LOC_Os05g06590NANA5+3382887..3385701retrotransposon protein, putative, unclassified
LOC_Os05g06600OsAffx.26762.1.S1_at11/115+3386486..3388890hypothetical protein
LOC_Os05g06600OsAffx.8723.1.S1_at2/115+3386486..3388890hypothetical protein
LOC_Os05g06600Os.54405.1.S1_at1/115+3386486..3388890hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4263.1.S1_at--11--7251Chr05:3361597..3361621 (25 bp)
GTCCCGAGGACCATACACGTATCAA
LOC_Os05g06560
OsAffx.4263.1.S1_at--59--8171Chr05:3361626..3361650 (25 bp)
GGAAAATCACCACCAGTTGAGTCTG
LOC_Os05g06560
OsAffx.4263.1.S1_at--442--5211Chr05:3361652..3361676 (25 bp)
GAATGTCTTTTTACAAGGGTGGCCA
LOC_Os05g06560
OsAffx.4263.1.S1_at--466--2891Chr05:3361666..3361690 (25 bp)
AAGGGTGGCCAGCATTGCGATCACA
LOC_Os05g06560
OsAffx.4263.1.S1_at--164--4951Chr05:3361677..3361701 (25 bp)
GCATTGCGATCACAAACTTCAGTTT
LOC_Os05g06560
OsAffx.4263.1.S1_at--170--3871Chr05:3361789..3361813 (25 bp)
CTGAGTTTCAATGTGCAGCCGGAAC
LOC_Os05g06560
OsAffx.4263.1.S1_at--468--5491Chr05:3361810..3361834 (25 bp)
GAACATCGGGAAGTGCAATTCTGAA
LOC_Os05g06560
OsAffx.4263.1.S1_at--415--5051Chr05:3361839..3361863 (25 bp)
GCAGCACGTTGTGTTGCGGTTTATC
LOC_Os05g06560
OsAffx.4263.1.S1_at--204--6691Chr05:3361851..3361875 (25 bp)
GTTGCGGTTTATCACGGTATACAAA
LOC_Os05g06560
OsAffx.4263.1.S1_at--85--7051Chr05:3361882..3361906 (25 bp)
GTAAAGCCGGATACGCAATCAGTTA
LOC_Os05g06560
OsAffx.4263.1.S1_at--665--9911Chr05:3361931..3362058 (25 bp)
TACTGCACTTGCAAATCTGCCAGGT
LOC_Os05g06560
Target Sequence 
GTCCCGAGGACCATACACGTATCAAGCTAGGAAAATCACCACCAGTTGAGTCTGAGAATGTCTTTTTACAAGGGTGGCCA
GCATTGCGATCACAAACTTCAGTTTGGGGGCACATTAGTCATACTAACAGAAGATACGACACACTTACTAGCTTGAATGT
GAAAGGATATAAGATGAATCTGATTGAAGTGCCTGAGTTTCAATGTGCAGCCGGAACATCGGGAAGTGCAATTCTGAATG
GGGCAGCACGTTGTGTTGCGGTTTATCACGGTATACAAAAGAATTGTAAAGCCGGATACGCAATCAGTTATCAAGATGTG
AAAACTTTTGTAGATACTGCACTTGCAAATCTGCCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis