Browse Element(s) Details


OsAffx.4294.1.S1_at

Description tigr:9633.m00920
TID=OsAffx.4294.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1058011/11Cullin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10540NANA5+5706328..5712483retrotransposon protein, putative, unclassified
LOC_Os05g10550OsAffx.26814.1.S1_at11/115+5720801..5722058hypothetical protein
LOC_Os05g10560OsAffx.14618.1.S1_x_at11/115+5726656..5727177IQ calmodulin-binding motif family protein, expressed
LOC_Os05g10570Os.35338.1.S1_at11/115+5728909..5730250expressed protein
LOC_Os05g10570Os.50835.1.S1_x_at11/115+5728909..5730250expressed protein
LOC_Os05g10580OsAffx.4294.1.S1_at11/115+5735815..5739914Cullin family protein, expressed
LOC_Os05g10590Os.52472.1.S1_at11/115+5743159..5746733expressed protein
LOC_Os05g10590Os.52472.2.S1_x_at11/115+5743159..5746733expressed protein
LOC_Os05g10600NANA5+5756046..5756468hypothetical protein
LOC_Os05g10610NANA5+5759560..5761776retrotransposon protein, putative, unclassified
LOC_Os05g10620Os.39872.1.A1_s_at11/115+5763454..5768869no apical meristem, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007049biological_processcell cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0000151cellular_componentubiquitin ligase complex
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4294.1.S1_at--601--10071Chr05:5737797..5737821 (25 bp)
TAGTGAACTGAATTCCTACCCTGAA
LOC_Os05g10580
OsAffx.4294.1.S1_at--405--2131Chr05:5737657..5737681 (25 bp)
ACAGGTTTACTCACATTCTACTACA
LOC_Os05g10580
OsAffx.4294.1.S1_at--96--6711Chr05:5736233..5736257 (25 bp)
GTTCCTGTCAAAGCTCCATTTACTG
LOC_Os05g10580
OsAffx.4294.1.S1_at--691--1491Chr05:5736206..5736230 (25 bp)
AGCACGTTTGAGTTTGGCAATTCCA
LOC_Os05g10580
OsAffx.4294.1.S1_at--554--10871Chr05:5736193..5736217 (25 bp)
TTGGCAATTCCAGCTGTAATCCTCC
LOC_Os05g10580
OsAffx.4294.1.S1_at--416--7071Chr05:5736178..5736202 (25 bp)
GTAATCCTCCTGACTCATTTGGATA
LOC_Os05g10580
OsAffx.4294.1.S1_at--1051--7931Chr05:5736158..5736182 (25 bp)
GGATATATACCAACCACCTCGAAAT
LOC_Os05g10580
OsAffx.4294.1.S1_at--118--5051Chr05:5736128..5736152 (25 bp)
GCAGAACGTCTTATGGCTCCTGAAA
LOC_Os05g10580
OsAffx.4294.1.S1_at--899--6331Chr05:5735989..5736013 (25 bp)
GATGCTATCACTGGACCTAGCTGAA
LOC_Os05g10580
OsAffx.4294.1.S1_at--756--6151Chr05:5735946..5735970 (25 bp)
GAGGTCTACCAGCAAATCTCAAGAA
LOC_Os05g10580
OsAffx.4294.1.S1_at--948--8171Chr05:5735894..5735918 (25 bp)
GGAAGTTCATCGACCATGGAGTTAA
LOC_Os05g10580
Target Sequence 
TAGTGAACTGAATTCCTACCCTGAATACATTCTCAAGGCCGAGGAATGCTTACAAAAAGAGAAAGAACAGGTTTACTCAC
ATTCTACTACAGAACCGAAGGATACCAGTGATAAGGGTATGGCTCTGGTGAAACATGGAACAGATACTGCCAAGAGTAGA
AAGGATAAGAAGAATGAAGTAATGGTGGGATTCCCAATAAATCTAATCAGTGGTTCACGAGTTGTTGATGAGATTTTAGG
ACGGGTTCCTGTCAAAGCTCCATTTACTGATAGCACGTTTGAGTTTGGCAATTCCAGCTGTAATCCTCCTGACTCATTTG
GATATATACCAACCACCTCGAAATCATTTGCAGAACGTCTTATGGCTCCTGAAAACGAGGATCTTGTAGTGATGCTATCA
CTGGACCTAGCTGAAGAGCTAGAGACAATTGATGAGGTCTACCAGCAAATCTCAAGAAAAGGAGAGCGAGGTTCCAGCAA
GTTGTGGAAGTTCATCGACCATGGAGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis