Browse Element(s) Details


Os.39872.1.A1_s_at

Description gb:CF321377
DB_XREF= gi:33693138
DB_XREF=HD--12-J20.g1
CLONE=HD--12-J20
TID=Os.39872.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39872 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1062011/11no apical meristem, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10580OsAffx.4294.1.S1_at11/115+5735815..5739914Cullin family protein, expressed
LOC_Os05g10590Os.52472.1.S1_at11/115+5743159..5746733expressed protein
LOC_Os05g10590Os.52472.2.S1_x_at11/115+5743159..5746733expressed protein
LOC_Os05g10600NANA5+5756046..5756468hypothetical protein
LOC_Os05g10610NANA5+5759560..5761776retrotransposon protein, putative, unclassified
LOC_Os05g10620Os.39872.1.A1_s_at11/115+5763454..5768869no apical meristem, putative, expressed
LOC_Os05g10630Os.25488.1.S1_at11/115+5771164..5776610O-sialoglycoprotein endopeptidase, putative, expressed
LOC_Os05g10640OsAffx.14622.1.S1_at11/115+5777695..5780025hAT family dimerisation domain containing protein
LOC_Os05g10650Os.9848.1.S1_at11/115+5792576..5794816Phosphofructokinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39872.1.A1_s_at--896--10731Chr05:5764525..5764549 (25 bp)
TTGAAAGTAACTCCTGTGCCCACCA
LOC_Os05g10620
Os.39872.1.A1_s_at--199--1231Chr05:5764498..5764522 (25 bp)
AGTTCATTCCCTGTCGTTGTCGACA
LOC_Os05g10620
Os.39872.1.A1_s_at--146--2411Chr05:5764474..5764498 (25 bp)
AAACAGTTGTATTCTCCTGTGGCGC
LOC_Os05g10620
Os.39872.1.A1_s_at--908--9271Chr05:5764460..5764484 (25 bp)
TCCTGTGGCGCTATTCCGAAGTGAA
LOC_Os05g10620
Os.39872.1.A1_s_at--872--2411Chr05:5763782..5763806 (25 bp)
AAAAAGCAGATTGGCCTCACCAGCG
LOC_Os05g10620
Os.39872.1.A1_s_at--743--7951Chr05:5763729..5763753 (25 bp)
GGATAACTTCCTGGATTCACAGTAG
LOC_Os05g10620
Os.39872.1.A1_s_at--333--5551Chr05:5763654..5763678 (25 bp)
GAAACTGGCTGTAATATCTTCGGCT
LOC_Os05g10620
Os.39872.1.A1_s_at--825--431Chr05:5763639..5763663 (25 bp)
ATCTTCGGCTACTGCTAGAGTGCTA
LOC_Os05g10620
Os.39872.1.A1_s_at--802--7311Chr05:5763620..5763644 (25 bp)
GTGCTAGTGCTAGTAACCTATCTAC
LOC_Os05g10620
Os.39872.1.A1_s_at--685--10151Chr05:5763602..5763626 (25 bp)
TATCTACTTCTGTTCTTAGCCCGTA
LOC_Os05g10620
Os.39872.1.A1_s_at--496--1651Chr05:5763585..5763609 (25 bp)
AGCCCGTAGGGCAGTATTGTTTCTT
LOC_Os05g10620
Target Sequence 
TTGAAAGTAACTCCTGTGCCCACCACCAGTTCATTCCCTGTCGTTGTCGACAAACAGTTGTATTCTCCTGTGGCGCTATT
CCGAAGTGAACATCTTCATNNNNGGAAGAACTTCAATTCATCAGCCCCAAAAAGCAGATTGGCCTCACCAGCGCTGGCCT
CCTGACAACCAAGATCAACATGGATAACTTCCTGGATTCACAGTAGATGAACTTAACTGGTAAATGGTTCTAGTGTTGAT
TTTGAAACGTACAACAGAAACTGGCTGTAATATCTTCGGCTACTGCTAGAGTGCTAGTGCTAGTAACCTATCTACTTCTG
TTCTTAGCCCGTAGGGCAGTATTGTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39872.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis