Browse Element(s) Details


Os.25488.1.S1_at

Description gb:AK102487.1
DB_XREF= gi:32987696
TID=Os.25488.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094M21, full insert sequence.
FL= gb:AK102487.1 gb:AK059566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1063011/11O-sialoglycoprotein endopeptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10590Os.52472.1.S1_at11/115+5743159..5746733expressed protein
LOC_Os05g10590Os.52472.2.S1_x_at11/115+5743159..5746733expressed protein
LOC_Os05g10600NANA5+5756046..5756468hypothetical protein
LOC_Os05g10610NANA5+5759560..5761776retrotransposon protein, putative, unclassified
LOC_Os05g10620Os.39872.1.A1_s_at11/115+5763454..5768869no apical meristem, putative, expressed
LOC_Os05g10630Os.25488.1.S1_at11/115+5771164..5776610O-sialoglycoprotein endopeptidase, putative, expressed
LOC_Os05g10640OsAffx.14622.1.S1_at11/115+5777695..5780025hAT family dimerisation domain containing protein
LOC_Os05g10650Os.9848.1.S1_at11/115+5792576..5794816Phosphofructokinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008450molecular_functionO-sialoglycoprotein endopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25488.1.S1_at--370--1071Chr05:5772124..5772148 (25 bp)
AGTGTTAACTAACATCCGTGCCCAT
LOC_Os05g10630
Os.25488.1.S1_at--190--9291Chr05:5772110..5772134 (25 bp)
TCCGTGCCCATGCAATGGCTGAAGT
LOC_Os05g10630
Os.25488.1.S1_at--98--2331Chr05:5772081..5772105 (25 bp)
AAAGATGAAGCTTCCGTTCCGACTC
LOC_Os05g10630
Os.25488.1.S1_at--55--6711Chr05:5772066..5772090 (25 bp)
GTTCCGACTCCAATTGCTGTAGATT
LOC_Os05g10630
Os.25488.1.S1_at--268--7271Chr05:5771505..5771529 (25 bp)
GTCCAGAGACATGTACTTCGGTTGA
LOC_Os05g10630
Os.25488.1.S1_at--264--311Chr05:5771478..5771502 (25 bp)
ATACGAAAGCCTTTGTGGCGGCACA
LOC_Os05g10630
Os.25488.1.S1_at--285--9451Chr05:5771399..5771423 (25 bp)
TCGGCAACCTCGTAACACTTATGTA
LOC_Os05g10630
Os.25488.1.S1_at--91--10171Chr05:5771321..5771345 (25 bp)
TATTTGGTCAGTTAAGCCCTACTCC
LOC_Os05g10630
Os.25488.1.S1_at--24--4311Chr05:5771304..5771328 (25 bp)
CCTACTCCCTTTTATGTGATCCATT
LOC_Os05g10630
Os.25488.1.S1_at--1143--2351Chr05:5771268..5771292 (25 bp)
AAAGCGATTCCTGCTGCTAATTTCA
LOC_Os05g10630
Os.25488.1.S1_at--586--3531Chr05:5771239..5771263 (25 bp)
CATGCTGTACCTCCTAGGGTGTGTT
LOC_Os05g10630
Target Sequence 
AGTGTTAACTAACATCCGTGCCCATGCAATGGCTGAAGTATCCAAAGATGAAGCTTCCGTTCCGACTCCAATTGCTGTAG
ATTCATGAGGTAATTCTTGTNTCTTTTCCTTCCTATCCAAGGAAATNAGAATACTTGGAAAGGAAGCCAGAGTCCAGAGA
CATGTACTTCGGTTGATGATACGAAAGCCTTTGTGGCGGCACATGGGAAGTTTCTTGTACTGCTGTGTGGGGTTAACCTG
GTGAAAGATTTGGATCATCGGCAACCTCGTAACACTTATGTATTTCATGTTGTATCTCTCAATAGATGAACCATGATTAA
ACAAACCACACCGTCTATTTGGTCAGTTAAGCCCTACTCCCTTTTATGTGATCCATTCATTTGATGTAAAAGCGATTCCT
GCTGCTAATTTCACTCCCATGCTGTACCTCCTAGGGTGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis