Browse Element(s) Details


Os.9848.1.S1_at

Description gb:AK071798.1
DB_XREF= gi:32981821
TID=Os.9848.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9848 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112B14, full insert sequence.
FL= gb:AK071798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1065011/11Phosphofructokinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10620Os.39872.1.A1_s_at11/115+5763454..5768869no apical meristem, putative, expressed
LOC_Os05g10630Os.25488.1.S1_at11/115+5771164..5776610O-sialoglycoprotein endopeptidase, putative, expressed
LOC_Os05g10640OsAffx.14622.1.S1_at11/115+5777695..5780025hAT family dimerisation domain containing protein
LOC_Os05g10650Os.9848.1.S1_at11/115+5792576..5794816Phosphofructokinase family protein, expressed
LOC_Os05g10660OsAffx.8589.1.S1_at1/115+5810829..5814142transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9848.1.S1_at--1079--5611Chr05:5794154..5794178 (25 bp)
GACAACGTCTACTGCTCGCTGCTCG
LOC_Os05g10650
Os.9848.1.S1_at--215--2091Chr05:5794254..5794362 (25 bp)
ACATCCCCTTCTACAGGATCACGGA
LOC_Os05g10650
Os.9848.1.S1_at--1152--7311Chr05:5794429..5794453 (25 bp)
GTGCTTCCTCAGCACGGAGGACGTC
LOC_Os05g10650
Os.9848.1.S1_at--84--971Chr05:5794476..5794500 (25 bp)
AGGAGCCGATCGTGCCGCTCGTCGA
LOC_Os05g10650
Os.9848.1.S1_at--1070--9371Chr05:5794497..5794521 (25 bp)
TCGAGGGCGAGAACTCGCTCGTCAA
LOC_Os05g10650
Os.9848.1.S1_at--278--4531Chr05:5794574..5794598 (25 bp)
GCCGCCTGAAGCTTGAAGAAGTAGC
LOC_Os05g10650
Os.9848.1.S1_at--561--1451Chr05:5794606..5794630 (25 bp)
AGAAGACGATCACACGGCCATGTTT
LOC_Os05g10650
Os.9848.1.S1_at--769--8431Chr05:5794621..5794645 (25 bp)
GGCCATGTTTGGTAGTGCGAAATTC
LOC_Os05g10650
Os.9848.1.S1_at--849--9551Chr05:5794680..5794704 (25 bp)
TCTTTAGATTCTTTTTGCTCATTCA
LOC_Os05g10650
Os.9848.1.S1_at--902--10271Chr05:5794693..5794717 (25 bp)
TTTGCTCATTCATTTTTCGGCTTGC
LOC_Os05g10650
Os.9848.1.S1_at--20--10531Chr05:5794708..5794732 (25 bp)
TTCGGCTTGCCGGTATAGAGGAAGT
LOC_Os05g10650
Target Sequence 
GACAACGTCTACTGCTCGCTGCTCGCCCACAGCGCCATCCATGGCGCCATGGCCGGGTACACCGGCTTCACCGTCGCACC
CGTCAATGGCCGCCACGCCTACATCCCCTTCTACAGGATCACGGAGAAGCAGAACAAGGTGGTCATCACGGACAGGATGT
GGGCGAGGGTGCTCTGCTCGACGAACCAGCCGTGCTTCCTCAGCACGGAGGACGTCGAGAAGGCAGGGCAGGACGACGAG
GAGCCGATCGTGCCGCTCGTCGAGGGCGAGAACTCGCTCGTCAAGGCGCCGCCGCTGCTGGCCAACGCCGGCGATNGCGC
CGCCCTCTGCAACGGCGCCGCCTGAAGCTTGAAGAAGTAGCTACACGAAGAAGACGATCACACGGCCATGTTTGGTAGTG
CGAAATTCACAGAAATGTTTATGTAATTGTAGGATNTTTTTTTTCTTTAGATTCTTTTTGCTCATTCATTTTTCGGCTTG
CCGGTATAGAGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis