Browse Element(s) Details


OsAffx.4345.1.S1_at

Description tigr:9633.m01361
TID=OsAffx.4345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polyprotein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1541011/11hypothetical protein
LOC_Os11g414301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15360Os.27007.1.A1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.20186.1.S1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.49286.1.S1_x_at10/115+8671073..8675764expressed protein
LOC_Os05g15360Os.24955.1.A1_x_at1/115+8671073..8675764expressed protein
LOC_Os05g15370Os.27007.1.A1_at3/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.49286.1.S1_x_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.9815.1.S1_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.24955.1.A1_x_at1/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15380OsAffx.31445.1.S1_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15380OsAffx.31445.1.S1_x_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15390OsAffx.26907.1.S1_at11/115+8686719..8687499hypothetical protein
LOC_Os05g15400NANA5+8689001..8692779hypothetical protein
LOC_Os05g15410OsAffx.4345.1.S1_at11/115+8696438..8696903hypothetical protein
LOC_Os05g15420Os.27691.1.S1_x_at1/115+8700243..8701208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15430Os.27691.1.S1_x_at1/115+8701784..8706022retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15440OsAffx.4346.1.S1_at11/115+8708121..8710221hypothetical protein
LOC_Os05g15440Os.56292.1.S1_x_at1/115+8708121..8710221hypothetical protein
LOC_Os05g15450NANA5+8711324..8712109retrotransposon protein, putative, unclassified
LOC_Os05g15460OsAffx.199.1.S1_at2/115+8713587..8715336retrotransposon protein, putative, unclassified
LOC_Os05g15470NANA5+8718684..8725404retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4345.1.S1_at--941--4811Chr05:8696510..8696534 (25 bp)
GCTCTTATGATGGACAGACTGCTGA
LOC_Os05g15410
OsAffx.4345.1.S1_at--1142--3791Chr05:8696547..8696571 (25 bp)
CTCCCCTTGGCACTGTAAACAACAT
LOC_Os05g15410
OsAffx.4345.1.S1_at--968--8451Chr05:8696577..8696601 (25 bp)
TGGCCATGTTGAGGAGTTCTACTTT
LOC_Os05g15410
OsAffx.4345.1.S1_at--472--931Chr05:8696588..8696612 (25 bp)
AGGAGTTCTACTTTTGACCAATGGT
LOC_Os05g15410
OsAffx.4345.1.S1_at--740--5532Chr11:24360324..24360579 (25 bp)
GAAACACCTTTTCCACCAATTGGCT
LOC_Os11g41430
OsAffx.4345.1.S1_at--655--10871Chr05:8696645..8696669 (25 bp)
TTGGCTTCCATGTACCTAACCGACA
LOC_Os05g15410
OsAffx.4345.1.S1_at--684--9791Chr05:8696661..8696685 (25 bp)
TAACCGACATCCTTCCAGACATGGT
LOC_Os05g15410
OsAffx.4345.1.S1_at--948--5651Chr05:8696678..8696790 (25 bp)
GACATGGTTCCACAGACCACAGAAT
LOC_Os05g15410
OsAffx.4345.1.S1_at--62--9171Chr05:8696798..8696822 (25 bp)
TCCCCAAGTCAGCAAAAGTGGAGTA
LOC_Os05g15410
OsAffx.4345.1.S1_at--706--3551Chr05:8696825..8696849 (25 bp)
CATCAAATATGCTGCTGGGCTAATA
LOC_Os05g15410
OsAffx.4345.1.S1_at--371--9111Chr05:8696834..8696858 (25 bp)
TGCTGCTGGGCTAATACCAAATGGT
LOC_Os05g15410
Target Sequence 
GCTCTTATGATGGACAGACTGCTGAATCTACAAGGACCTCCCCTTGGCACTGTAAACAACATTGAGCTGGCCATGTTGAG
GAGTTCTACTTTTGACCAATGGTGGGCTGAATGGAAGAAACACCTTTTCCACCAATTGGCTTCCATGTACCTAACCGACA
TCCTTCCAGACATGGTTCCACAGACCACAGAATCTTCTCCTCCCCAAGTCAGCAAAAGTGGAGTAAACATCAAATATGCT
GCTGGGCTAATACCAAATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis