Browse Element(s) Details


OsAffx.4346.1.S1_at

Description tigr:9633.m01364
TID=OsAffx.4346.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1544011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15370Os.27007.1.A1_at3/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.49286.1.S1_x_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.9815.1.S1_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.24955.1.A1_x_at1/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15380OsAffx.31445.1.S1_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15380OsAffx.31445.1.S1_x_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15390OsAffx.26907.1.S1_at11/115+8686719..8687499hypothetical protein
LOC_Os05g15400NANA5+8689001..8692779hypothetical protein
LOC_Os05g15410OsAffx.4345.1.S1_at11/115+8696438..8696903hypothetical protein
LOC_Os05g15420Os.27691.1.S1_x_at1/115+8700243..8701208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15430Os.27691.1.S1_x_at1/115+8701784..8706022retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15440OsAffx.4346.1.S1_at11/115+8708121..8710221hypothetical protein
LOC_Os05g15440Os.56292.1.S1_x_at1/115+8708121..8710221hypothetical protein
LOC_Os05g15450NANA5+8711324..8712109retrotransposon protein, putative, unclassified
LOC_Os05g15460OsAffx.199.1.S1_at2/115+8713587..8715336retrotransposon protein, putative, unclassified
LOC_Os05g15470NANA5+8718684..8725404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15480OsAffx.4347.1.S1_at11/115+8734339..8735391hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4346.1.S1_at--68--311Chr05:8709357..8709381 (25 bp)
ATAGCTAAAGCACCTCCAGCTAGCA
LOC_Os05g15440
OsAffx.4346.1.S1_at--632--3331Chr05:8709403..8709427 (25 bp)
CACCGGCTCCAATACATTTGACTTA
LOC_Os05g15440
OsAffx.4346.1.S1_at--370--3571Chr05:8709417..8709437 (21 bp)
CATTTGACTTATCAACCTCGGCCAA
LOC_Os05g15440
OsAffx.4346.1.S1_at--529--491Chr05:8709682..8709706 (25 bp)
ATCGGCTAGAGGCAGTCACCACATT
LOC_Os05g15440
OsAffx.4346.1.S1_at--828--3751Chr05:8709899..8709923 (25 bp)
CTCTAGCCGATGATCTTAAAACCAT
LOC_Os05g15440
OsAffx.4346.1.S1_at--235--331Chr05:8709922..8709946 (25 bp)
ATACTCAAAGACATAGCACATCGGC
LOC_Os05g15440
OsAffx.4346.1.S1_at--589--9451Chr05:8709942..8709966 (25 bp)
TCGGCTTGAGAGCTCCTTAGATGCT
LOC_Os05g15440
OsAffx.4346.1.S1_at--235--4311Chr05:8709956..8709980 (25 bp)
CCTTAGATGCTTTAGTTGTGGACTG
LOC_Os05g15440
OsAffx.4346.1.S1_at--581--6451Chr05:8710015..8710039 (25 bp)
GATCAAATCCCTGATAATGCAGCTG
LOC_Os05g15440
OsAffx.4346.1.S1_at--134--5071Chr05:8710033..8710057 (25 bp)
GCAGCTGAAGTCATCTCTCCAGCAG
LOC_Os05g15440
OsAffx.4346.1.S1_at--722--3531Chr05:8710143..8710167 (25 bp)
CATCCAATCAAATCGGCAATCCATC
LOC_Os05g15440
Target Sequence 
ATAGCTAAAGCACCTCCAGCTAGCACCCCTGCTCCTCAAAGAACTCCACCGGCTCCAATACATTTGACTTATCAACCTCG
GCCAATTCATTCTCCAACTCCAATCCAGCATGAAACAAGCGAGCATACTCCATCGGCTAGAGGCAGTCACCACATTGAAG
ATCAGCCGATTCCTGCCATCCCTGCCTTAGCGGATATGTTTTCATTTGACATTAGGCAGTTCATGGATGAAGAGGAAGAA
ACGTCAAGCAAAGCACAAGCTCCTCTAGCCGATGATCTTAAAACCATACTCAAAGACATAGCACATCGGCTTGAGAGCTC
CTTAGATGCTTTAGTTGTGGACTGTGGTCCAATCAGGGCAAGGTTTGAAGAAATACAAGATCAAATCCCTGATAATGCAG
CTGAAGTCATCTCTCCAGCAGTCTTCCTTGAGCAATATCGGTACAAACTGGAGAGAGCAAGACAAAGGATAGCCGATAGG
AGGGAAAGAAAAGACCTTGAAGCTACCATCCAATCAAATCGGCAATCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis