Browse Element(s) Details


OsAffx.4455.1.S1_at

Description tigr:9633.m02591
TID=OsAffx.4455.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g283309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28290Os.11731.1.S1_at11/115+16481663..16484384Ran-binding protein 1 homolog c, putative, expressed
LOC_Os05g28300Os.18379.1.S2_at11/115+16488396..16499850expressed protein
LOC_Os05g28300Os.18379.1.S1_at10/115+16488396..16499850expressed protein
LOC_Os05g28310OsAffx.14860.1.S1_at11/115+16502029..16502646hypothetical protein
LOC_Os05g28320OsAffx.4454.1.S1_at11/115+16504231..16505142Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g28330OsAffx.4455.1.S1_at9/115+16506391..16509122hypothetical protein
LOC_Os05g28340NANA5+16512960..16515729retrotransposon protein, putative, unclassified
LOC_Os05g28350OsAffx.4456.1.S1_at2/115+16522859..16523668AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4455.1.S1_at--1012--7671Chr05:16506439..16506459 (21 bp)
GGGTTTGGCACCTTGCGTTGGCTTA
LOC_Os05g28330
OsAffx.4455.1.S1_at--1093--8491NONE
TGGCACCTTGCGTTGGCTTACTGAG
NONE
OsAffx.4455.1.S1_at--860--6611Chr05:16507411..16507431 (21 bp)
GTTGGCTTACTGAGGTTGCATTGTA
LOC_Os05g28330
OsAffx.4455.1.S1_at--134--9931Chr05:16507414..16507438 (25 bp)
TACTGAGGTTGCATTGTATGAACAA
LOC_Os05g28330
OsAffx.4455.1.S1_at--824--7571Chr05:16507446..16507470 (25 bp)
GGGCGGCTATTGCATCATTCTCCAC
LOC_Os05g28330
OsAffx.4455.1.S1_at--498--71Chr05:16507454..16507478 (25 bp)
ATTGCATCATTCTCCACTAATACAG
LOC_Os05g28330
OsAffx.4455.1.S1_at--802--10831Chr05:16507488..16507512 (25 bp)
TTGTGGATGAGGCTCCCTCCAGGCT
LOC_Os05g28330
OsAffx.4455.1.S1_at--1009--891NONE
AGGCTCCAGGCGATGCTTAGGGTCA
NONE
OsAffx.4455.1.S1_at--561--3491Chr05:16508620..16508639 (20 bp)
CAGGCGATGCTTAGGGTCAATGAGA
LOC_Os05g28330
OsAffx.4455.1.S1_at--557--8891Chr05:16508635..16508659 (25 bp)
TGAGAAGTACAAATCAAACCCTGAT
LOC_Os05g28330
OsAffx.4455.1.S1_at--93--10491Chr05:16509068..16509092 (25 bp)
TTACTATGCATTACTATTTGCTAAG
LOC_Os05g28330
Target Sequence 
GGGTTTGGCACCTTGCGTTGGCTTACTGAGGTTGCATTGTATGAACAACTACTTGGGGCGGCTATTGCATCATTCTCCAC
TAATACAGAATGGATTTTTGTGGATGAGGCTCCCTCCAGGCTCCAGGCGATGCTTAGGGTCAATGAGAAGTACAAATCAA
ACCCTGATAATGATTTTAATTACTATGCATTACTATTTGCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis