Browse Element(s) Details


OsAffx.4511.1.S1_s_at

Description tigr:9633.m03132
TID=OsAffx.4511.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Integral membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3390011/11nodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33850Os.16982.1.S1_at11/115+19885722..19890373UBA/TS-N domain containing protein, expressed
LOC_Os05g33860NANA5+19894208..19895259hypothetical protein
LOC_Os05g33870OsAffx.4510.1.S1_at11/115+19898356..19899306Ran GTPase activating protein, putative
LOC_Os05g33880Os.11188.1.S1_at10/115+19900616..19904541Cystatin domain containing protein, expressed
LOC_Os05g33890Os.32863.1.S1_at11/115+19905608..19910939Microtubule associated protein containing protein, expressed
LOC_Os05g33890Os.25587.2.S1_at3/115+19905608..19910939Microtubule associated protein containing protein, expressed
LOC_Os05g33900OsAffx.4511.1.S1_s_at11/115+19914384..19916416nodulin, putative, expressed
LOC_Os05g33900OsAffx.4511.1.S1_at11/115+19914384..19916416nodulin, putative, expressed
LOC_Os05g33910OsAffx.19817.1.S1_x_at10/115+19919542..19920089MATE efflux family protein, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4511.1.S1_s_at--232--2931Chr05:19914640..19914664 (25 bp)
AAGGACGAGGCCTAGGCTAGACAGA
LOC_Os05g33900
OsAffx.4511.1.S1_s_at--36--891Chr05:19914633..19914657 (25 bp)
AGGCCTAGGCTAGACAGATAGGTCC
LOC_Os05g33900
OsAffx.4511.1.S1_s_at--136--3871Chr05:19914607..19914631 (25 bp)
CTGATCGGTGAACCATTGCGTCATT
LOC_Os05g33900
OsAffx.4511.1.S1_s_at--1127--6391Chr05:19914605..19914629 (25 bp)
GATCGGTGAACCATTGCGTCATTTC
LOC_Os05g33900
OsAffx.4511.1.S1_s_at--95--10391Chr05:19914574..19914598 (25 bp)
TTTTCTTGCCTCTGTTCTTCCCTGA
LOC_Os05g33900
OsAffx.4511.1.S1_s_at--72--3011Chr05:19914531..19914555 (25 bp)
AATGATGTAAGCAATGGTGGTAATT
LOC_Os05g33900
OsAffx.4511.1.S1_s_at--350--10451Chr05:19914486..19914510 (25 bp)
TTAGTAAAGCTAATGTGGTGTGGAA
LOC_Os05g33900
OsAffx.4511.1.S1_s_at--898--8011Chr05:19914456..19914480 (25 bp)
GGAGGATGCAATCATGCAATCGACG
LOC_Os05g33900
OsAffx.4511.1.S1_s_at--666--7631Chr05:19914430..19914454 (25 bp)
GGGAGAGTTTTGTAACCTCTCTCGA
LOC_Os05g33900
OsAffx.4511.1.S1_s_at--477--1211Chr05:19914425..19914449 (25 bp)
AGTTTTGTAACCTCTCTCGATCTGG
LOC_Os05g33900
OsAffx.4511.1.S1_s_at--947--7051Chr05:19914419..19914443 (25 bp)
GTAACCTCTCTCGATCTGGTTATTC
LOC_Os05g33900
Target Sequence 
AAGGACGAGGCCTAGGCTAGACAGATAGGTCCACTGATCGGTGAACCATTGCGTCATTTCACCATCTTTTCTTGCCTCTG
TTCTTCCCTGAGATGTTGTAGTGGCACATAATGATGTAAGCAATGGTGGTAATTAAGTAGTAGTAAATTAGTAATTAGTA
AAGCTAATGTGGTGTGGAAGATGAGGAGGATGCAATCATGCAATCGACGAGGGAGAGTTTTGTAACCTCTCTCGATCTGG
TTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4511.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis