Browse Element(s) Details


OsAffx.4573.1.S1_at

Description tigr:9633.m03762
TID=OsAffx.4573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4031011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40280Os.49461.1.S1_at10/115+23579143..23583475B3 DNA binding domain containing protein, expressed
LOC_Os05g40290Os.8667.1.S1_at11/115+23589542..23594088KH domain-containing protein, putative, expressed
LOC_Os05g40300NANA5+23602655..23602976expressed protein
LOC_Os05g40310OsAffx.4573.1.S1_at11/115+23605464..23607764expressed protein
LOC_Os05g40320Os.53940.1.S1_at11/115+23609733..23614179pentatricopeptide, putative, expressed
LOC_Os05g40320Os.53940.1.S2_at10/115+23609733..23614179pentatricopeptide, putative, expressed
LOC_Os05g40320OsAffx.14143.1.S1_at1/115+23609733..23614179pentatricopeptide, putative, expressed
LOC_Os05g40330Os.50012.1.S1_at11/115+23614535..23617464auxin efflux carrier family protein, putative, expressed
LOC_Os05g40340OsAffx.15037.1.S1_at10/115+23621899..23622617hypothetical protein
LOC_Os05g40350OsAffx.27257.1.S1_at11/115+23624347..23624876hypothetical protein
LOC_Os05g40360OsAffx.27258.1.S1_at11/115+23626304..23627186hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4573.1.S1_at--316--772Chr10:20642674..20642757 (24 bp)
ATGTCGAGGTCGAACAGCCGCGCCG
NONE
OsAffx.4573.1.S1_at--791--3371Chr05:23605968..23605992 (25 bp)
CACCATGCGCCGGAGCTTGAAGGAA
LOC_Os05g40310
OsAffx.4573.1.S1_at--33--2391Chr05:23605941..23605965 (25 bp)
AAACGTCGATGAGCCGGAGACGCCG
LOC_Os05g40310
OsAffx.4573.1.S1_at--908--3771Chr05:23605912..23605936 (25 bp)
CTCGCCGGAGCCTGAAGGAAAAAGC
LOC_Os05g40310
OsAffx.4573.1.S1_at--614--5531Chr05:23605895..23605919 (25 bp)
GAAAAAGCCGACGTTGATGCGCCGC
LOC_Os05g40310
OsAffx.4573.1.S1_at--145--4511Chr05:23605889..23605913 (25 bp)
GCCGACGTTGATGCGCCGCCAGAGA
LOC_Os05g40310
OsAffx.4573.1.S1_at--863--5891Chr05:23605848..23605872 (25 bp)
GAGCTTGAAGGAAGCCGACGTCGAC
LOC_Os05g40310
OsAffx.4573.1.S1_at--249--4531Chr05:23605812..23605836 (25 bp)
GCCGCCCACTCGACGGAGCATAAAA
LOC_Os05g40310
OsAffx.4573.1.S1_at--270--5351Chr05:23605787..23605811 (25 bp)
GAAGATGCCGATGATGCGCCAGAGA
LOC_Os05g40310
OsAffx.4573.1.S1_at--263--1831Chr05:23605763..23605787 (25 bp)
ACGCCGACGACCAAGCAAGACATTG
LOC_Os05g40310
OsAffx.4573.1.S1_at--913--5151Chr05:23605749..23605773 (25 bp)
GCAAGACATTGGTTCGCCGGAGACG
LOC_Os05g40310
Target Sequence 
ATGTCGAGGTCGAACAGCCGCGCCGCCGAGTCGCCCACCATGCGCCGGAGCTTGAAGGAAGAAAACGTCGATGAGCCGGA
GACGCCGCCCACTCGCCGGAGCCTGAAGGAAAAAGCCGACGTTGATGCGCCGCCAGAGACGCCACCCACTCGCCGGAGCT
TGAAGGAAGCCGACGTCGACGAGCCAGATACGCCGCCCACTCGACGGAGCATAAAAGAAGATGCCGATGATGCGCCAGAG
ACGCCGACGACCAAGCAAGACATTGGTTCGCCGGAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis