Browse Element(s) Details


OsAffx.4606.1.S1_x_at

Description tigr:9633.m04055
TID=OsAffx.4606.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=lipoic acid synthetase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4358211/11rRNA methylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43560Os.17049.1.S1_at11/115+25238156..25247656expressed protein
LOC_Os05g43570Os.21326.1.S1_at11/115+25248678..25256568Protein kinase domain containing protein, expressed
LOC_Os05g43576Os.7615.1.S1_at10/115+25260594..25263053Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os05g43582OsAffx.4606.1.S1_x_at11/115+25263615..25266095rRNA methylase family protein, expressed
LOC_Os05g43590OsAffx.15087.1.S1_at11/115+25267428..25268366Serpin family protein
LOC_Os05g43600OsAffx.27293.1.S1_at11/115+25272116..25272558hypothetical protein
LOC_Os05g43610Os.54191.1.S1_at11/115+25274047..25279555BRCA1 C Terminus domain containing protein, expressed
LOC_Os05g43619NANA5+25283734..25284146NA
LOC_Os05g43630Os.52238.1.S1_at6/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43630OsAffx.8898.1.S1_at1/115+25285221..25286730transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4606.1.S1_x_at--397--2711Chr05:25265555..25265579 (25 bp)
AAGCTTGCCTATTGATACCTGGATG
LOC_Os05g43582
OsAffx.4606.1.S1_x_at--902--3011Chr05:25265594..25265618 (25 bp)
AATGCTCAATAGACCAGCGGCTCCA
LOC_Os05g43582
OsAffx.4606.1.S1_x_at--207--4351Chr05:25265616..25265640 (25 bp)
CCAGTACTCATTCTCCTGTACAAGA
LOC_Os05g43582
OsAffx.4606.1.S1_x_at--286--2171Chr05:25265648..25265672 (25 bp)
ACACCTTCTATGACCTACTTGTGGG
LOC_Os05g43582
OsAffx.4606.1.S1_x_at--678--10071Chr05:25265685..25265709 (25 bp)
TAGTGAGCGACCACATGCTTACTTG
LOC_Os05g43582
OsAffx.4606.1.S1_x_at--377--10731Chr05:25265707..25265731 (25 bp)
TTGCATGCCAAGTGCCACAATGACC
LOC_Os05g43582
OsAffx.4606.1.S1_x_at--925--10251Chr05:25265810..25265834 (25 bp)
TTTGAGAGCTTCTTTTTCGCCAGGC
LOC_Os05g43582
OsAffx.4606.1.S1_x_at--298--9331Chr05:25265826..25265850 (25 bp)
TCGCCAGGCCAACTTTTGAGAGCTT
LOC_Os05g43582
OsAffx.4606.1.S1_x_at--815--2871Chr05:25265890..25265914 (25 bp)
AAGGGCAATTGCTTTGAGCCACACT
LOC_Os05g43582
OsAffx.4606.1.S1_x_at--245--3331Chr05:25265911..25265935 (25 bp)
CACTCGTGACTTTACTCCTTTTTAG
LOC_Os05g43582
OsAffx.4606.1.S1_x_at--842--311Chr05:25266035..25266059 (25 bp)
ATACCCTACTCTTGTTTCGTGGATT
LOC_Os05g43582
Target Sequence 
AAGCTTGCCTATTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCATTCTCCTGT
ACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTTAGTGAGCGACCACATGCTTACTTGCATGC
CAAGTGCCACAATGACCAAGGATTCAAGATTTGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGG
GTATTGATAACAACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATATGTTTCAAGC
ACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTTGATGTTTTGT
ATTGGCAACAATAAAGGGGTAGCACACGAGACATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGC
ATACCCTACTCTTGTTTCGTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4606.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis