Browse Element(s) Details


OsAffx.4615.1.S1_at

Description tigr:9633.m04185
TID=OsAffx.4615.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4482011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44786OsAffx.31479.4.S1_x_at9/115+25951871..25957958AT hook motif-containing protein, putative
LOC_Os05g44786OsAffx.31479.1.S1_x_at9/115+25951871..25957958AT hook motif-containing protein, putative
LOC_Os05g44792OsAffx.31479.5.S1_x_at9/115+25959745..25966219hypothetical protein
LOC_Os05g44792Os.49246.1.S1_x_at1/115+25959745..25966219hypothetical protein
LOC_Os05g44800Os.50163.1.S1_at11/115+25966667..25969496expressed protein
LOC_Os05g44810Os.8618.1.S1_at11/115+25969709..25973061AUX/IAA family protein, expressed
LOC_Os05g44820OsAffx.4615.1.S1_at11/115+25974830..25975385hypothetical protein
LOC_Os05g44830Os.7307.3.S1_x_at1/115+25979998..25980638transposon protein, putative, unclassified
LOC_Os05g44840NANA5+25981663..25983092hypothetical protein
LOC_Os05g44850NANA5+25984705..25985577retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g44860NANA5+25986960..25988447retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g44870NANA5+25991581..25993650Zinc knuckle family protein
LOC_Os05g44880NANA5+25996702..26002802retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4615.1.S1_at--508--2271Chr05:25975319..25975343 (25 bp)
AAATCGGCAGGGATGGTGGCCCTCT
LOC_Os05g44820
OsAffx.4615.1.S1_at--567--3771Chr05:25975298..25975322 (25 bp)
CTCTCCCTGTTGGTCGTGGATACCA
LOC_Os05g44820
OsAffx.4615.1.S1_at--672--7511Chr05:25975283..25975307 (25 bp)
GTGGATACCACCTTTGGGACTGCCA
LOC_Os05g44820
OsAffx.4615.1.S1_at--566--10251Chr05:25975271..25975295 (25 bp)
TTTGGGACTGCCACCAGTATCACCT
LOC_Os05g44820
OsAffx.4615.1.S1_at--118--4571Chr05:25975239..25975263 (25 bp)
GCGCCGGCCTACAGGAGAAGAGCTA
LOC_Os05g44820
OsAffx.4615.1.S1_at--338--1051Chr05:25975176..25975200 (25 bp)
AGGGATTTTGTTGCGTCTGACACGT
LOC_Os05g44820
OsAffx.4615.1.S1_at--1105--7791Chr05:25975150..25975174 (25 bp)
GGTCCCACTGTATTTCATTTCTTTT
LOC_Os05g44820
OsAffx.4615.1.S1_at--900--9552Chr05:25974932..25975155 (25 bp)
TCTTTTTGTTGATTGCTCCTCATGG
LOC_Os05g44820
OsAffx.4615.1.S1_at--530--9451Chr05:25974913..25974937 (25 bp)
TCATGGGCCTTCCTGGCAAAAACGA
LOC_Os05g44820
OsAffx.4615.1.S1_at--181--8131Chr05:25974877..25974901 (25 bp)
TGGAAAACACGGTCGGTGTACCTCG
LOC_Os05g44820
OsAffx.4615.1.S1_at--487--7751Chr05:25974863..25974887 (25 bp)
GGTGTACCTCGGAACCCTGCAGTTG
LOC_Os05g44820
Target Sequence 
AAATCGGCAGGGATGGTGGCCCTCTCCCTGTTGGTCGTGGATACCACCTTTGGGACTGCCACCAGTATCACCTTCATGGT
GCGCCGGCCTACAGGAGAAGAGCTAAAGAGAGAGAAGGAGAGGGAGATAGGGAAGAGAGGGGTAGGGATTTTGTTGCGTC
TGACACGTGGGTCCCACTGTATTTCATTTCTTTTTGTTGATTGCTCCTCATGGGCCTTCCTGGCAAAAACGAACAGGTCG
AGTTGGAAAACACGGTCGGTGTACCTCGGAACCCTGCAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis