Browse Element(s) Details


OsAffx.4718.1.S1_at

Description tigr:9634.m00354
TID=OsAffx.4718.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0441011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04370Os.54353.1.S1_at11/116+1863558..1867212leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g04380Os.6080.1.S1_at11/116+1871647..1874910Glycine cleavage T-protein containing protein, expressed
LOC_Os06g04390Os.11342.1.S1_at11/116+1875621..1879228expressed protein
LOC_Os06g04390OsAffx.16554.1.S1_at1/116+1875621..1879228expressed protein
LOC_Os06g04400OsAffx.27453.1.S1_at11/116+1883183..1883512hypothetical protein
LOC_Os06g04410OsAffx.4718.1.S1_at11/116+1890152..1891189hypothetical protein
LOC_Os06g04420OsAffx.4719.1.S1_at11/116+1892930..1893307Lipoxygenase 2, putative
LOC_Os06g04430OsAffx.15260.1.S1_at11/116+1896434..1896853hypothetical protein
LOC_Os06g04440OsAffx.27454.1.S1_at11/116+1898595..1899626hypothetical protein
LOC_Os06g04450Os.7031.1.S1_at11/116+1899883..1907931SNARE-interacting protein KEULE, putative, expressed
LOC_Os06g04460Os.13555.1.S1_at11/116+1908682..1912018hypersensitive-induced reaction protein 4, putative, expressed
LOC_Os06g04470Os.22672.1.S1_at11/116+1913175..1917037expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4718.1.S1_at--1004--491Chr06:1890706..1890730 (25 bp)
ATCGGGACACGGAAGATGGACATCG
LOC_Os06g04410
OsAffx.4718.1.S1_at--500--7991Chr06:1890669..1890693 (25 bp)
GGATGAAGCGGTCCATCCACTGCAT
LOC_Os06g04410
OsAffx.4718.1.S1_at--87--7311Chr06:1890638..1890662 (25 bp)
GTGCGGCGGCAAGTTGTACCACTTC
LOC_Os06g04410
OsAffx.4718.1.S1_at--719--6971Chr06:1890623..1890647 (25 bp)
GTACCACTTCATCAGGTCGACAGCG
LOC_Os06g04410
OsAffx.4718.1.S1_at--1072--391Chr06:1890613..1890637 (25 bp)
ATCAGGTCGACAGCGTACGGCGTGC
LOC_Os06g04410
OsAffx.4718.1.S1_at--185--7431Chr06:1890568..1890592 (25 bp)
GTGTTCACCACCGTGCGGATGAAGC
LOC_Os06g04410
OsAffx.4718.1.S1_at--312--5751Chr06:1890524..1890548 (25 bp)
GACGGACATGTTCGTGGCCTCCATC
LOC_Os06g04410
OsAffx.4718.1.S1_at--171--9231Chr06:1890474..1890498 (25 bp)
TCCACCTGGTGTTCATCTTCGAAAG
LOC_Os06g04410
OsAffx.4718.1.S1_at--552--4771Chr06:1890290..1890314 (25 bp)
GCTGCCCAACAGCATCTACTGGATG
LOC_Os06g04410
OsAffx.4718.1.S1_at--397--3291Chr06:1890197..1890221 (25 bp)
CAAAGGCGTTGCTGAATCGGCTGAT
LOC_Os06g04410
OsAffx.4718.1.S1_at--559--491Chr06:1890182..1890206 (25 bp)
ATCGGCTGATGGTACATGGTGCCGC
LOC_Os06g04410
Target Sequence 
ATCGGGACACGGAAGATGGACATCGAAGGCCGGCAGCGGATGAAGCGGTCCATCCACTGCATCACGTCGTGCGGCGGCAA
GTTGTACCACTTCATCAGGTCGACAGCGTACGGCGTGCTCGAGCTCTCGCCGGAGCCGGTGTTCACCACCGTGCGGATGA
AGCCGGCCAGCCCGTTCACCACGACGGACATGTTCGTGGCCTCCATCTTCTCCGTCGACGTCGACGGCAAGCTCCACCTG
GTGTTCATCTTCGAAAGCGGTGGCGGTGTCGTCGCCGACGTGGCCGTGTACAGGGTGGACCTGGAGAAGCGGAAGCACGT
CAGGATTGGGAGCATCGGCGACCGCGCCATCCTCGTCGGCGGCAGGAGGAACGACATGGGAGCAGCTGGGTGGTGCAGGG
CTCGCCGCCATGGGTTGCTGCCCAACAGCATCTACTGGATGAACCCGGGGGATCGTCGGCTGCGCGTGTATGAGCTTGGG
AAGAGGACGGAAGAAGTGAGGGATCCTTTCAAAGGCGTTGCTGAATCGGCTGATGGTACATGGTGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis