Browse Element(s) Details


Os.13555.1.S1_at

Description gb:AK060303.1
DB_XREF= gi:32970321
TID=Os.13555.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033102H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A02, full insert sequence.
FL= gb:AK060303.1 gb:AK102678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0446011/11hypersensitive-induced reaction protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04410OsAffx.4718.1.S1_at11/116+1890152..1891189hypothetical protein
LOC_Os06g04420OsAffx.4719.1.S1_at11/116+1892930..1893307Lipoxygenase 2, putative
LOC_Os06g04430OsAffx.15260.1.S1_at11/116+1896434..1896853hypothetical protein
LOC_Os06g04440OsAffx.27454.1.S1_at11/116+1898595..1899626hypothetical protein
LOC_Os06g04450Os.7031.1.S1_at11/116+1899883..1907931SNARE-interacting protein KEULE, putative, expressed
LOC_Os06g04460Os.13555.1.S1_at11/116+1908682..1912018hypersensitive-induced reaction protein 4, putative, expressed
LOC_Os06g04470Os.22672.1.S1_at11/116+1913175..1917037expressed protein
LOC_Os06g04480Os.56019.1.S1_at11/116+1921430..1922594expressed protein
LOC_Os06g04490OsAffx.4720.1.S1_x_at11/116+1923874..1924299hypothetical protein
LOC_Os06g04500NANA6+1926467..1927636ER-derived vesicles protein ERV14, putative
LOC_Os06g04510Os.21318.1.S1_at11/116+1930302..1935378Enolase 1, putative, expressed
LOC_Os06g04520Os.52134.1.S1_at11/116+1936858..1947666expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13555.1.S1_at--139--3271Chr06:1909184..1909208 (25 bp)
CAAAACACCTTTCCGGTGTCGGCAT
LOC_Os06g04460
Os.13555.1.S1_at--945--8711Chr06:1909168..1909192 (25 bp)
TGTCGGCATTGCTAGACAGCGGCAG
LOC_Os06g04460
Os.13555.1.S1_at--999--2151Chr06:1909153..1909177 (25 bp)
ACAGCGGCAGGCGATAACTGATGGC
LOC_Os06g04460
Os.13555.1.S1_at--172--8431Chr06:1909131..1909155 (25 bp)
GGCCTGAGAGAGAACATCCTGAACT
LOC_Os06g04460
Os.13555.1.S1_at--857--8971Chr06:1909112..1909136 (25 bp)
TGAACTTCTCGCACTCGGTTTCAGG
LOC_Os06g04460
Os.13555.1.S1_at--824--9431Chr06:1909098..1909122 (25 bp)
TCGGTTTCAGGCACCTCAGCAAAAG
LOC_Os06g04460
Os.13555.1.S1_at--771--8871Chr06:1908935..1908959 (25 bp)
TGATGGAAGCGTCCTGCAGCAACGT
LOC_Os06g04460
Os.13555.1.S1_at--692--5051Chr06:1908920..1908944 (25 bp)
GCAGCAACGTGTAAATCGGTATCGA
LOC_Os06g04460
Os.13555.1.S1_at--1071--10011Chr06:1908823..1908847 (25 bp)
TAGCATGTGTTGTTTGCACGCGCGC
LOC_Os06g04460
Os.13555.1.S1_at--311--1831Chr06:1908806..1908830 (25 bp)
ACGCGCGCCCTGGAGTTGTATGCAG
LOC_Os06g04460
Os.13555.1.S1_at--278--2111Chr06:1908719..1908743 (25 bp)
ACATGTCTTCCTTTTGTGAGTTAAA
LOC_Os06g04460
Target Sequence 
CAAAACACCTTTCCGGTGTCGGCATTGCTAGACAGCGGCAGGCGATAACTGATGGCCTGAGAGAGAACATCCTGAACTTC
TCGCACTCGGTTTCAGGCACCTCAGCAAAAGAAGTCATGGATCTCATCATGGTCACGCAGTACTTCGACACCATCAAAGA
ACTTGGGGATGGCTCGAAGAACACCACGGTGTTCATACCTCATGGCCCAGGCCATGTCAGGGATATCAGCGAGCAAATCC
GGAATGGTATGATGGAAGCGTCCTGCAGCAACGTGTAAATCGGTATCGAATGCGGAACCAAGGTTGGGGGTGGTTCAGNT
GGGAGGTCCTGTTTATAGTGAATAGTACGAATGAATGCTAGTAGCATGTGTTGTTTGCACGCGCGCCCTGGAGTTGTATG
CAGTGGTAGATAGAGTTCGAGTTTTGNCATAATAATATTGTCTGAATTTTATGTAAAAGAAAATCACATGTCTTCCTTTT
GTGAGTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis