Browse Element(s) Details


Os.52134.1.S1_at

Description gb:AK065081.1
DB_XREF= gi:32975099
TID=Os.52134.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001L08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001L08, full insert sequence.
FL= gb:AK065081.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0452011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04460Os.13555.1.S1_at11/116+1908682..1912018hypersensitive-induced reaction protein 4, putative, expressed
LOC_Os06g04470Os.22672.1.S1_at11/116+1913175..1917037expressed protein
LOC_Os06g04480Os.56019.1.S1_at11/116+1921430..1922594expressed protein
LOC_Os06g04490OsAffx.4720.1.S1_x_at11/116+1923874..1924299hypothetical protein
LOC_Os06g04500NANA6+1926467..1927636ER-derived vesicles protein ERV14, putative
LOC_Os06g04510Os.21318.1.S1_at11/116+1930302..1935378Enolase 1, putative, expressed
LOC_Os06g04520Os.52134.1.S1_at11/116+1936858..1947666expressed protein
LOC_Os06g04530Os.14723.1.S1_at10/116+1948450..1952326ATP-dependent Clp protease proteolytic subunit 2, putative, expressed
LOC_Os06g04540Os.55065.1.S1_at11/116+1961307..1962581DNA-binding protein, putative, expressed
LOC_Os06g04550OsAffx.15261.1.S1_at11/116+1967626..1970807hypothetical protein
LOC_Os06g04560Os.48368.1.S1_s_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560Os.48368.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560OsAffx.15262.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52134.1.S1_at--837--8031Chr06:1946960..1946984 (25 bp)
GGAGTTGCTTTTGTCCTCAAGGTAA
LOC_Os06g04520
Os.52134.1.S1_at--1072--1291Chr06:1946993..1947017 (25 bp)
AGATGCAGTTTTCATTTCCTTCCAG
LOC_Os06g04520
Os.52134.1.S1_at--994--731Chr06:1947044..1947068 (25 bp)
ATGTTCTTGTTGTCGGTATTACCCT
LOC_Os06g04520
Os.52134.1.S1_at--819--6831Chr06:1947085..1947109 (25 bp)
GTTTCTGATACAAGGCTTCTTCCCT
LOC_Os06g04520
Os.52134.1.S1_at--765--2211Chr06:1947116..1947140 (25 bp)
ACAAGTTCTTGCTCCCAGATTAACG
LOC_Os06g04520
Os.52134.1.S1_at--631--5451Chr06:1947146..1947170 (25 bp)
GAACGTTCTATCTTGCTTCTGTTAA
LOC_Os06g04520
Os.52134.1.S1_at--967--2531Chr06:1947224..1947248 (25 bp)
AACTCAATTGGTTCGCTTCCACAAA
LOC_Os06g04520
Os.52134.1.S1_at--132--4091Chr06:1947305..1947329 (25 bp)
CGAGCGGAGCTAGCTTTGTCAGTCT
LOC_Os06g04520
Os.52134.1.S1_at--871--1151Chr06:1947325..1947349 (25 bp)
AGTCTGAAACTCTGGCGCTCAAGTC
LOC_Os06g04520
Os.52134.1.S1_at--471--8111Chr06:1947501..1947525 (25 bp)
GGACGCGCTACATGCAGGAAATTGA
LOC_Os06g04520
Os.52134.1.S1_at--463--10471Chr06:1947574..1947598 (25 bp)
TTACCTGATGGCACAACACTTCTAT
LOC_Os06g04520
Target Sequence 
GGAGTTGCTTTTGTCCTCAAGGTAACATTGTTCAGATGCAGTTTTCATTTCCTTCCAGTTTATTTTACAGGAACATCTAT
GAACATGTTCTTGTTGTCGGTATTACCCTGCTGGTAATTTATTCAGTTTCTGATACAAGGCTTCTTCCCTCTGCACACAA
GTTCTTGCTCCCAGATTAACGTATATGAACGTTCTATCTTGCTTCTGTTAATCATTTCCAATGTGATGGCACTAAGGTTT
TGGAGCAAGATAACTCATTTGATGAACTCAATTGGTTCGCTTCCACAAAAGCAAAATTGGAAGGAGAGGCAAAGGACAGG
GACGACAAGAAAACCGATAGAAACACGAGCGGAGCTAGCTTTGTCAGTCTGAAACTCTGGCGCTCAAGTCCACCTGTTAG
GACAGAGCAGCAAAAGGGTGGTGTTGACAAGGGGACGCGCTACATGCAGGAAATTGAGCTTATAGAATGTCTATTCAGGC
TTGCTAGAACAGTATTGAGATGAAATTACCTGATGGCACAACACTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis