Browse Element(s) Details


Os.48368.1.S1_s_at

Description gb:CR281709
DB_XREF= gi:44668275
DB_XREF=CR281709
CLONE=y695d10p3
TID=Os.48368.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48368 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_563908.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0456011/11armadillo/beta-catenin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04520Os.52134.1.S1_at11/116+1936858..1947666expressed protein
LOC_Os06g04530Os.14723.1.S1_at10/116+1948450..1952326ATP-dependent Clp protease proteolytic subunit 2, putative, expressed
LOC_Os06g04540Os.55065.1.S1_at11/116+1961307..1962581DNA-binding protein, putative, expressed
LOC_Os06g04550OsAffx.15261.1.S1_at11/116+1967626..1970807hypothetical protein
LOC_Os06g04560Os.48368.1.S1_s_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560Os.48368.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560OsAffx.15262.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04570OsAffx.27455.1.S1_at11/116+1986292..1987387hypothetical protein
LOC_Os06g04580OsAffx.15263.1.S1_at10/116+1989030..1992736YEATS family protein, expressed
LOC_Os06g04580Os.10792.1.S1_at10/116+1989030..1992736YEATS family protein, expressed
LOC_Os06g04590OsAffx.27456.1.S1_at3/116+1999174..1999570Auxin responsive protein, expressed
LOC_Os06g04600Os.15940.1.S1_at11/116+1999873..2008069Brix domain containing protein, expressed
LOC_Os06g04600Os.15940.2.S1_at6/116+1999873..2008069Brix domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48368.1.S1_s_at--558--5291Chr06:1973107..1973131 (25 bp)
GAAGGTGCTTTATGGGAACTTGTTC
LOC_Os06g04560
Os.48368.1.S1_s_at--338--5471Chr06:1973092..1973116 (25 bp)
GAACTTGTTCGGATTTCAAGGGATT
LOC_Os06g04560
Os.48368.1.S1_s_at--109--9731Chr06:1973077..1973101 (25 bp)
TCAAGGGATTGTTCTCGTGAGGACA
LOC_Os06g04560
Os.48368.1.S1_s_at--92--6731Chr06:1973067..1973091 (25 bp)
GTTCTCGTGAGGACATAAGGATGCT
LOC_Os06g04560
Os.48368.1.S1_s_at--634--351Chr06:1973053..1973077 (25 bp)
ATAAGGATGCTAGCGTACCGGACAT
LOC_Os06g04560
Os.48368.1.S1_s_at--774--9971Chr06:1973043..1973067 (25 bp)
TAGCGTACCGGACATTGACTTCCAG
LOC_Os06g04560
Os.48368.1.S1_s_at--313--4371Chr06:1973016..1973040 (25 bp)
CCACTCTTCAATCAGAGATGAGAAG
LOC_Os06g04560
Os.48368.1.S1_s_at--438--6591Chr06:1972992..1973016 (25 bp)
GATTGCGCATAGAATGCTGATAACC
LOC_Os06g04560
Os.48368.1.S1_s_at--393--4751Chr06:1972977..1973001 (25 bp)
GCTGATAACCGACTATTTGCTGCTG
LOC_Os06g04560
Os.48368.1.S1_s_at--1112--5691Chr06:1972967..1972991 (25 bp)
GACTATTTGCTGCTGGTTCACTGCT
LOC_Os06g04560
Os.48368.1.S1_s_at--98--10291Chr06:1972962..1972986 (25 bp)
TTTGCTGCTGGTTCACTGCTTGGTT
LOC_Os06g04560
Target Sequence 
GAAGGTGCTTTATGGGAACTTGTTCGGATTTCAAGGGATTGTTCTCGTGAGGACATAAGGATGCTAGCGTACCGGACATT
GACTTCCAGCCCCACTCTTCAATCAGAGATGAGAAGATTGCGCATAGAATGCTGATAACCGACTATTTGCTGCTGGTTCA
CTGCTTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48368.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis