Browse Element(s) Details


Os.10792.1.S1_at

Description gb:AK109053.1
DB_XREF= gi:32994262
TID=Os.10792.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E07, full insert sequence.
FL= gb:AK109053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0458010/11YEATS family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04550OsAffx.15261.1.S1_at11/116+1967626..1970807hypothetical protein
LOC_Os06g04560Os.48368.1.S1_s_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560Os.48368.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560OsAffx.15262.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04570OsAffx.27455.1.S1_at11/116+1986292..1987387hypothetical protein
LOC_Os06g04580OsAffx.15263.1.S1_at10/116+1989030..1992736YEATS family protein, expressed
LOC_Os06g04580Os.10792.1.S1_at10/116+1989030..1992736YEATS family protein, expressed
LOC_Os06g04590OsAffx.27456.1.S1_at3/116+1999174..1999570Auxin responsive protein, expressed
LOC_Os06g04600Os.15940.1.S1_at11/116+1999873..2008069Brix domain containing protein, expressed
LOC_Os06g04600Os.15940.2.S1_at6/116+1999873..2008069Brix domain containing protein, expressed
LOC_Os06g04610Os.5449.1.S2_at11/116+2008997..2014660ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04610Os.5449.1.S1_at11/116+2008997..2014660ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04620Os.49218.1.S1_at11/116+2016779..2018352GDP-mannose 4,6 dehydratase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10792.1.S1_at--471--4771NONE
GCTGCTCGGCAACAGGTGCAAGCTC
NONE
Os.10792.1.S1_at--570--4371Chr06:1992302..1992422 (25 bp)
CCAAAGCTGTTTCTGTTCAAGGCCA
LOC_Os06g04580
Os.10792.1.S1_at--226--6731Chr06:1992412..1992436 (25 bp)
GTTCAAGGCCAACAATTTGGGCACG
LOC_Os06g04580
Os.10792.1.S1_at--835--2231Chr06:1992423..1992447 (25 bp)
ACAATTTGGGCACGGCTAATTTGCT
LOC_Os06g04580
Os.10792.1.S1_at--126--8831Chr06:1992480..1992504 (25 bp)
TGATAACAACGCTCTAACTAGATGA
LOC_Os06g04580
Os.10792.1.S1_at--120--6891Chr06:1992521..1992545 (25 bp)
GTATTTCCATTGTAGCTGTTGCCTT
LOC_Os06g04580
Os.10792.1.S1_at--454--10671Chr06:1992525..1992549 (25 bp)
TTCCATTGTAGCTGTTGCCTTAGCC
LOC_Os06g04580
Os.10792.1.S1_at--1118--2311Chr06:1992666..1992690 (25 bp)
AAAGGGCTCATCTAAGCTGTTAATT
LOC_Os06g04580
Os.10792.1.S1_at--14--4751Chr06:1992681..1992705 (25 bp)
GCTGTTAATTTTTGCCCTGCTATAT
LOC_Os06g04580
Os.10792.1.S1_at--847--171Chr06:1992688..1992712 (25 bp)
ATTTTTGCCCTGCTATATTATGGAC
LOC_Os06g04580
Os.10792.1.S1_at--372--8531Chr06:1992708..1992732 (25 bp)
TGGACATTCTAGAACAAGTACGATT
LOC_Os06g04580
Target Sequence 
GCTGCTCGGCAACAGGTGCAAGCTCACATAGCTAAGCTGAGAAGGCAATTAAGCATGATAGATGGAATGCCTCAGCAATC
CAAAGCTGTTTCTGTTCAAGGCCAACAATTTGGGCACGGCTAATTTGCTANNNGNGCNNNNNNANGNNANANGNNGGGAT
NTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCNCTGTATTTCCATTGTAGCTGTTGCCTTAGCCCTTGGGCTT
GCAATTAATGTACTAACAAGCAGTGTCATTGTGCATATATTNTACTATGATTTCATTCNTNTTATGANAANANNNANNNN
NNNNANNNNNCCTTTTACTCCATACTGAAAGGGCTCATCTAAGCTGTTAATTTTTGCCCTGCTATATTATGGACATTCTA
GAACAAGTACGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis