Browse Element(s) Details


OsAffx.15262.1.S1_at

Description tigr:9634.m00372
TID=OsAffx.15262.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=kinesin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0456011/11armadillo/beta-catenin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04520Os.52134.1.S1_at11/116+1936858..1947666expressed protein
LOC_Os06g04530Os.14723.1.S1_at10/116+1948450..1952326ATP-dependent Clp protease proteolytic subunit 2, putative, expressed
LOC_Os06g04540Os.55065.1.S1_at11/116+1961307..1962581DNA-binding protein, putative, expressed
LOC_Os06g04550OsAffx.15261.1.S1_at11/116+1967626..1970807hypothetical protein
LOC_Os06g04560Os.48368.1.S1_s_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560Os.48368.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560OsAffx.15262.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04570OsAffx.27455.1.S1_at11/116+1986292..1987387hypothetical protein
LOC_Os06g04580OsAffx.15263.1.S1_at10/116+1989030..1992736YEATS family protein, expressed
LOC_Os06g04580Os.10792.1.S1_at10/116+1989030..1992736YEATS family protein, expressed
LOC_Os06g04590OsAffx.27456.1.S1_at3/116+1999174..1999570Auxin responsive protein, expressed
LOC_Os06g04600Os.15940.1.S1_at11/116+1999873..2008069Brix domain containing protein, expressed
LOC_Os06g04600Os.15940.2.S1_at6/116+1999873..2008069Brix domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15262.1.S1_at--102--2651Chr06:1974473..1974497 (25 bp)
AACCAAGATCTTATCATGGCCCAAG
LOC_Os06g04560
OsAffx.15262.1.S1_at--1111--1271Chr06:1974468..1974492 (25 bp)
AGATCTTATCATGGCCCAAGGTGGT
LOC_Os06g04560
OsAffx.15262.1.S1_at--868--7731Chr06:1974449..1974473 (25 bp)
GGTGGTGTAAGCCTGTTATCTATGA
LOC_Os06g04560
OsAffx.15262.1.S1_at--375--10431Chr06:1974434..1974458 (25 bp)
TTATCTATGACAGCATCTGATGCGG
LOC_Os06g04560
OsAffx.15262.1.S1_at--706--4971Chr06:1974422..1974446 (25 bp)
GCATCTGATGCGGAGGACCCACAAA
LOC_Os06g04560
OsAffx.15262.1.S1_at--1020--8011Chr06:1974411..1974435 (25 bp)
GGAGGACCCACAAACTCTAAGAATG
LOC_Os06g04560
OsAffx.15262.1.S1_at--419--5291Chr06:1974391..1974415 (25 bp)
GAATGGTTGCTGGAGCCATCGCCAA
LOC_Os06g04560
OsAffx.15262.1.S1_at--833--4331Chr06:1974377..1974400 (24 bp)
CCATCGCCAACCTTTGTGGCAATGA
LOC_Os06g04560
OsAffx.15262.1.S1_at--520--671Chr06:1974012..1974034 (23 bp)
ATGACAAACTGCAAACACGGTTGAG
LOC_Os06g04560
OsAffx.15262.1.S1_at--496--1051Chr06:1973981..1974005 (25 bp)
AGGTGGCATCAAAGCATTGCTGGGA
LOC_Os06g04560
OsAffx.15262.1.S1_at--814--5271Chr06:1973958..1973982 (25 bp)
GAATGGTCAAATGCGGGCACCCTGA
LOC_Os06g04560
Target Sequence 
AACCAAGATCTTATCATGGCCCAAGGTGGTGTAAGCCTGTTATCTATGACAGCATCTGATGCGGAGGACCCACAAACTCT
AAGAATGGTTGCTGGAGCCATCGCCAACCTTTGTGGCAATGACAAACTGCAAACACGGTTGAGAGGAGAAGGTGGCATCA
AAGCATTGCTGGGAATGGTCAAATGCGGGCACCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis