Browse Element(s) Details


OsAffx.15261.1.S1_at

Description tigr:9634.m00371
TID=OsAffx.15261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0455011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04520Os.52134.1.S1_at11/116+1936858..1947666expressed protein
LOC_Os06g04530Os.14723.1.S1_at10/116+1948450..1952326ATP-dependent Clp protease proteolytic subunit 2, putative, expressed
LOC_Os06g04540Os.55065.1.S1_at11/116+1961307..1962581DNA-binding protein, putative, expressed
LOC_Os06g04550OsAffx.15261.1.S1_at11/116+1967626..1970807hypothetical protein
LOC_Os06g04560Os.48368.1.S1_s_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560Os.48368.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560OsAffx.15262.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04570OsAffx.27455.1.S1_at11/116+1986292..1987387hypothetical protein
LOC_Os06g04580OsAffx.15263.1.S1_at10/116+1989030..1992736YEATS family protein, expressed
LOC_Os06g04580Os.10792.1.S1_at10/116+1989030..1992736YEATS family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15261.1.S1_at--608--6131Chr06:1970529..1970553 (25 bp)
GAGGGTTCAAGAGTCGTTGCCGTCT
LOC_Os06g04550
OsAffx.15261.1.S1_at--762--9391Chr06:1970542..1970566 (25 bp)
TCGTTGCCGTCTTCTTTGACTCCAT
LOC_Os06g04550
OsAffx.15261.1.S1_at--368--10572Chr06:1970553..1970577 (25 bp)
TTCTTTGACTCCATCCGTGGCGGGA
LOC_Os06g04550
OsAffx.15261.1.S1_at--39--4331Chr06:1970612..1970636 (25 bp)
CCATCCGTGGCAGGAGAGCTCAGGA
LOC_Os06g04550
OsAffx.15261.1.S1_at--746--10491Chr06:1970655..1970679 (25 bp)
TTCAACCCCATCCACAGCGGGAGGG
LOC_Os06g04550
OsAffx.15261.1.S1_at--387--3531Chr06:1970663..1970687 (25 bp)
CATCCACAGCGGGAGGGCTCAGGAA
LOC_Os06g04550
OsAffx.15261.1.S1_at--65--7651Chr06:1970673..1970697 (25 bp)
GGGAGGGCTCAGGAACCGCCAACAT
LOC_Os06g04550
OsAffx.15261.1.S1_at--677--3591Chr06:1970680..1970704 (25 bp)
CTCAGGAACCGCCAACATCGTTGTC
LOC_Os06g04550
OsAffx.15261.1.S1_at--413--3271Chr06:1970692..1970716 (25 bp)
CAACATCGTTGTCCCTCGTATTAGA
LOC_Os06g04550
OsAffx.15261.1.S1_at--116--4051Chr06:1970698..1970722 (25 bp)
CGTTGTCCCTCGTATTAGACGTGGA
LOC_Os06g04550
OsAffx.15261.1.S1_at--192--7251Chr06:1970702..1970726 (25 bp)
GTCCCTCGTATTAGACGTGGAAAAT
LOC_Os06g04550
Target Sequence 
GAGGGTTCAAGAGTCGTTGCCGTCTTCTTTGACTCCATCCGTGGCGGGAGGGCTCGGGAACCGTCGTCATCGCTGGCCTT
CTCCCATCCGTGGCAGGAGAGCTCAGGAGGCACCACCGCCATCGTCTTCAACCCCATCCACAGCGGGAGGGCTCAGGAAC
CGCCAACATCGTTGTCCCTCGTATTAGACGTGGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis