Browse Element(s) Details


Os.14723.1.S1_at

Description gb:AK099815.1
DB_XREF= gi:32985024
TID=Os.14723.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-035-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099L17, full insert sequence.
FL= gb:AK061385.1 gb:AK099815.1 gb:AK104375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0453010/11ATP-dependent Clp protease proteolytic subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04490OsAffx.4720.1.S1_x_at11/116+1923874..1924299hypothetical protein
LOC_Os06g04500NANA6+1926467..1927636ER-derived vesicles protein ERV14, putative
LOC_Os06g04510Os.21318.1.S1_at11/116+1930302..1935378Enolase 1, putative, expressed
LOC_Os06g04520Os.52134.1.S1_at11/116+1936858..1947666expressed protein
LOC_Os06g04530Os.14723.1.S1_at10/116+1948450..1952326ATP-dependent Clp protease proteolytic subunit 2, putative, expressed
LOC_Os06g04540Os.55065.1.S1_at11/116+1961307..1962581DNA-binding protein, putative, expressed
LOC_Os06g04550OsAffx.15261.1.S1_at11/116+1967626..1970807hypothetical protein
LOC_Os06g04560Os.48368.1.S1_s_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560Os.48368.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560OsAffx.15262.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008236molecular_functionserine-type peptidase activity
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14723.1.S1_at--839--6631Chr06:1951525..1951549 (25 bp)
GTTGTCAGAGCACACAGGTCATCCT
LOC_Os06g04530
Os.14723.1.S1_at--986--431Chr06:1951844..1951868 (25 bp)
ATCTATCTAGGGTGAAGCGCTTCGA
LOC_Os06g04530
Os.14723.1.S1_at--1155--6871Chr06:1951904..1951928 (25 bp)
GTATTATTAGGCCTTCTCGCATCAA
LOC_Os06g04530
Os.14723.1.S1_at--75--391Chr06:1951958..1951982 (25 bp)
ATCTACGTAATCTGGGACTTGGCTA
LOC_Os06g04530
Os.14723.1.S1_at--267--6791Chr06:1952010..1952034 (25 bp)
GTTAGATTGTATTGTTCTCCCCTCA
LOC_Os06g04530
Os.14723.1.S1_at--473--9911Chr06:1952036..1952060 (25 bp)
TACTCCTGCTTTGAAATCCTACTGC
LOC_Os06g04530
Os.14723.1.S1_at--840--211Chr06:1952098..1952122 (25 bp)
ATTTGTTTTGCTGTCTCCATTGGTA
LOC_Os06g04530
Os.14723.1.S1_at--848--3091Chr06:1952166..1952190 (25 bp)
AATACGGTACTCTAGTTGCCATTCT
LOC_Os06g04530
Os.14723.1.S1_at--963--6671Chr06:1952180..1952204 (25 bp)
GTTGCCATTCTGGTGATCTCATTTT
LOC_Os06g04530
Os.14723.1.S1_at--639--2391Chr06:1952208..1952232 (25 bp)
AAACATATCGAGAGACGCGTCATAC
LOC_Os06g04530
Os.14723.1.S1_at--1103--6671NONE
GTTGCTGTGGTCTGCAATATGATCC
NONE
Target Sequence 
GTTGTCAGAGCACACAGGTCATCCTGTTGATAAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATGCTGAAGGAG
CTTTGGAATATGGGATTATTGACCGTATTATTAGGCCTTCTCGCATCAAGAAAGAGGGATCCACTGCTCAAAAGAAGGAT
CTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTCTCCCCTCATTACT
CCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCTGTCTCCATTG
GTATTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTTGCCATTCTGGTGATCTC
ATTTTGTCAAACATATCGAGAGACGCGTCATACATTTTNGTGATATCAGGCGAGAATGTTCTTGTTAAATAATGTGTTCG
TTGCCTGNAAATCTTCAAAAGGGTTGCTGTGGTCTGCAATATGATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis