Browse Element(s) Details


Os.21318.1.S1_at

Description gb:AK069316.1
DB_XREF= gi:32979340
TID=Os.21318.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.21318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013C22, full insert sequence.
FL= gb:AK069316.1 gb:AK104904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0451011/11Enolase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04450Os.7031.1.S1_at11/116+1899883..1907931SNARE-interacting protein KEULE, putative, expressed
LOC_Os06g04460Os.13555.1.S1_at11/116+1908682..1912018hypersensitive-induced reaction protein 4, putative, expressed
LOC_Os06g04470Os.22672.1.S1_at11/116+1913175..1917037expressed protein
LOC_Os06g04480Os.56019.1.S1_at11/116+1921430..1922594expressed protein
LOC_Os06g04490OsAffx.4720.1.S1_x_at11/116+1923874..1924299hypothetical protein
LOC_Os06g04500NANA6+1926467..1927636ER-derived vesicles protein ERV14, putative
LOC_Os06g04510Os.21318.1.S1_at11/116+1930302..1935378Enolase 1, putative, expressed
LOC_Os06g04520Os.52134.1.S1_at11/116+1936858..1947666expressed protein
LOC_Os06g04530Os.14723.1.S1_at10/116+1948450..1952326ATP-dependent Clp protease proteolytic subunit 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004634molecular_functionphosphopyruvate hydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21318.1.S1_at--1108--531Chr06:1931594..1931712 (25 bp)
ATCCCACAAGGGTTGCCAAGGCAAT
LOC_Os06g04510
Os.21318.1.S1_at--331--5691Chr06:1931560..1931584 (25 bp)
GACTTGCAATGCTCTTCTCTTGAAG
LOC_Os06g04510
Os.21318.1.S1_at--612--9651Chr06:1931155..1931262 (25 bp)
TCAGTTGGTCTGTCTACGGGTCAAA
LOC_Os06g04510
Os.21318.1.S1_at--895--7191Chr06:1931112..1931136 (25 bp)
GTCGGTCAGAGCGTCTGGCTAAATA
LOC_Os06g04510
Os.21318.1.S1_at--208--1231Chr06:1930560..1930584 (25 bp)
AGAGCCCCTGTGGAGCCGTACTAAA
LOC_Os06g04510
Os.21318.1.S1_at--543--1971Chr06:1930541..1930565 (25 bp)
ACTAAACCTTGGCACCTTGCGGTGA
LOC_Os06g04510
Os.21318.1.S1_at--393--8851Chr06:1930519..1930543 (25 bp)
TGATCTTGTGCCTATGGACCATGGT
LOC_Os06g04510
Os.21318.1.S1_at--135--5611Chr06:1930422..1930446 (25 bp)
GAAATTGCTTAGTTACCCTCGCTTT
LOC_Os06g04510
Os.21318.1.S1_at--434--4291Chr06:1930406..1930430 (25 bp)
CCTCGCTTTTTCGTTAATGGCCAGA
LOC_Os06g04510
Os.21318.1.S1_at--84--6611Chr06:1930383..1930407 (25 bp)
GATTGTTTGCTTACTACTGTGTTGA
LOC_Os06g04510
Os.21318.1.S1_at--898--7411Chr06:1930365..1930389 (25 bp)
GTGTTGACACACTTGAGCACCAATA
LOC_Os06g04510
Target Sequence 
ATCCCACAAGGGTTGCCAAGGCAATTAGTGAAAAGACTTGCAATGCTCTTCTCTTGAAGGTGAATCAAATAGGCTCAGTT
ACTGAGAGCATTGAGGCTGTTAGAATGTCCAAGCGTGCTGGATGGGGAGTGATGGCAAGCCATAGGAGTGGTGAGACAGA
GGATACCTTCATTGCTGACCTCTCAGTTGGTCTGTCTACGGGTCAAATTAAGACAGGAGCTCCCTGTCGGTCAGAGCGTC
TGGCTAAATACAACCAGCTGCTCAGGATAGAAGAAGAGCTGGGCGATGCTGCAGTTTACGCTGGAGAAAAATTCAGAGCC
CCTGTGGAGCCGTACTAAACCTTGGCACCTTGCGGTGATCTTGTGCCTATGGACCATGGTGCCATCAATNTANTACTGCG
TTTTTACACGAGTCTACAAGGGCAATAAAATTAGTANTTCTTGACAGTCCCAGAAATTGCTTAGTTACCCTCGCTTTTTC
GTTAATGGCCAGATTGTTTGCTTACTACTGTGTTGACACACTTGAGCACCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis