Browse Element(s) Details


Os.56019.1.S1_at

Description gb:AK109132.1
DB_XREF= gi:32994341
TID=Os.56019.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56019 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-D11, full insert sequence.
FL= gb:AK109132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0448011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04430OsAffx.15260.1.S1_at11/116+1896434..1896853hypothetical protein
LOC_Os06g04440OsAffx.27454.1.S1_at11/116+1898595..1899626hypothetical protein
LOC_Os06g04450Os.7031.1.S1_at11/116+1899883..1907931SNARE-interacting protein KEULE, putative, expressed
LOC_Os06g04460Os.13555.1.S1_at11/116+1908682..1912018hypersensitive-induced reaction protein 4, putative, expressed
LOC_Os06g04470Os.22672.1.S1_at11/116+1913175..1917037expressed protein
LOC_Os06g04480Os.56019.1.S1_at11/116+1921430..1922594expressed protein
LOC_Os06g04490OsAffx.4720.1.S1_x_at11/116+1923874..1924299hypothetical protein
LOC_Os06g04500NANA6+1926467..1927636ER-derived vesicles protein ERV14, putative
LOC_Os06g04510Os.21318.1.S1_at11/116+1930302..1935378Enolase 1, putative, expressed
LOC_Os06g04520Os.52134.1.S1_at11/116+1936858..1947666expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56019.1.S1_at--133--7011Chr06:1921801..1922024 (25 bp)
GTACTCGCTCGAAAGTCTAAGGCCG
LOC_Os06g04480
Os.56019.1.S1_at--1136--1611Chr06:1922032..1922056 (25 bp)
AGCTGGTGGATCTGGGCTCTCGTAA
LOC_Os06g04480
Os.56019.1.S1_at--754--2511Chr06:1922055..1922079 (25 bp)
AACTTCTTCCTTTGCGCACGGAGAA
LOC_Os06g04480
Os.56019.1.S1_at--181--5111Chr06:1922070..1922094 (25 bp)
GCACGGAGAACACCTGCTGCTTAAT
LOC_Os06g04480
Os.56019.1.S1_at--201--4771Chr06:1922085..1922109 (25 bp)
GCTGCTTAATTTTCAATCTGCTTTC
LOC_Os06g04480
Os.56019.1.S1_at--1096--10491Chr06:1922117..1922141 (25 bp)
TTAAGCATCTGCTTTCTGCTCTGCT
LOC_Os06g04480
Os.56019.1.S1_at--906--9091Chr06:1922133..1922157 (25 bp)
TGCTCTGCTGCTTAGGACTTGTTTA
LOC_Os06g04480
Os.56019.1.S1_at--35--331Chr06:1922373..1922397 (25 bp)
ATACGTGTTGTGCTTGACATGCCGT
LOC_Os06g04480
Os.56019.1.S1_at--172--451Chr06:1922432..1922456 (25 bp)
ATCTTTGATGGATCTTCAGAGCCGT
LOC_Os06g04480
Os.56019.1.S1_at--509--1671Chr06:1922451..1922475 (25 bp)
AGCCGTGGAGAGACTGAACTTGTAC
LOC_Os06g04480
Os.56019.1.S1_at--1146--6431Chr06:1922507..1922531 (25 bp)
GATCATGTTTGTACTGCTAGCTGTT
LOC_Os06g04480
Target Sequence 
GTACTCGCTCGAAAGTCTAAGGCCGGAGGAGAAGCTGGTGGATCTGGGCTCTCGTAACTTCTTCCTTTGCGCACGGAGAA
CACCTGCTGCTTAATTTTCAATCTGCTTTCGTTTTTGTTAAGCATCTGCTTTCTGCTCTGCTGCTTAGGACTTGTTTAGT
TCCAAATTTTTTTTTTGTCAAACTTCCAATTTTCCATCACATCGAACATTTTATACACACGCAACTTTTCTATCACATCG
TATCAATTTCAACCAAGCTTCTAAATTTTAAAATTTCAGTGTGAACTAAACACGACCTTAATTGATTCAAGCGAGCAGAG
CATGCAACTGATCACCTGCTCGTCACGAGCTGCTGCATCACGAGCTCGTGATCATACGTGTTGTGCTTGACATGCCGTCG
GCTAGCTCATCGCGACGTCGCCTCTACTGTTCATCTTTGATGGATCTTCAGAGCCGTGGAGAGACTGAACTTGTACTTTT
TTTTTTCCTTTTCTCTTCTTTTCTGAAGATCATGTTTGTACTGCTAGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis