Browse Element(s) Details


OsAffx.4719.1.S1_at

Description tigr:9634.m00355
TID=OsAffx.4719.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lipoxygenase III
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0442011/11Lipoxygenase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04380Os.6080.1.S1_at11/116+1871647..1874910Glycine cleavage T-protein containing protein, expressed
LOC_Os06g04390Os.11342.1.S1_at11/116+1875621..1879228expressed protein
LOC_Os06g04390OsAffx.16554.1.S1_at1/116+1875621..1879228expressed protein
LOC_Os06g04400OsAffx.27453.1.S1_at11/116+1883183..1883512hypothetical protein
LOC_Os06g04410OsAffx.4718.1.S1_at11/116+1890152..1891189hypothetical protein
LOC_Os06g04420OsAffx.4719.1.S1_at11/116+1892930..1893307Lipoxygenase 2, putative
LOC_Os06g04430OsAffx.15260.1.S1_at11/116+1896434..1896853hypothetical protein
LOC_Os06g04440OsAffx.27454.1.S1_at11/116+1898595..1899626hypothetical protein
LOC_Os06g04450Os.7031.1.S1_at11/116+1899883..1907931SNARE-interacting protein KEULE, putative, expressed
LOC_Os06g04460Os.13555.1.S1_at11/116+1908682..1912018hypersensitive-induced reaction protein 4, putative, expressed
LOC_Os06g04470Os.22672.1.S1_at11/116+1913175..1917037expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4719.1.S1_at--1088--3731Chr06:1893249..1893273 (25 bp)
CTCAAGTCGTGCAGCACCATGATGA
LOC_Os06g04420
OsAffx.4719.1.S1_at--176--9051Chr06:1893240..1893264 (25 bp)
TGCAGCACCATGATGACACGGAGGA
LOC_Os06g04420
OsAffx.4719.1.S1_at--1088--5071Chr06:1893236..1893260 (25 bp)
GCACCATGATGACACGGAGGAGTAC
LOC_Os06g04420
OsAffx.4719.1.S1_at--1119--5671Chr06:1893092..1893116 (25 bp)
GACTTTGGACACAGCGAAGGAGGCA
LOC_Os06g04420
OsAffx.4719.1.S1_at--897--1631Chr06:1893080..1893104 (25 bp)
AGCGAAGGAGGCATTCCGGCAATTC
LOC_Os06g04420
OsAffx.4719.1.S1_at--142--6211Chr06:1893073..1893097 (25 bp)
GAGGCATTCCGGCAATTCGGCGACC
LOC_Os06g04420
OsAffx.4719.1.S1_at--1125--71Chr06:1893068..1893092 (25 bp)
ATTCCGGCAATTCGGCGACCGCCTT
LOC_Os06g04420
OsAffx.4719.1.S1_at--969--3911Chr06:1893056..1893080 (25 bp)
CGGCGACCGCCTTGTCGGGATCAAG
LOC_Os06g04420
OsAffx.4719.1.S1_at--918--4311Chr06:1893048..1893072 (25 bp)
GCCTTGTCGGGATCAAGGCGCGCAT
LOC_Os06g04420
OsAffx.4719.1.S1_at--17--1271Chr06:1893018..1893042 (25 bp)
AGATGAACCGGGACCCGCGCCTCAG
LOC_Os06g04420
OsAffx.4719.1.S1_at--851--3731Chr06:1892998..1893022 (25 bp)
CTCAGGAATTGCACGGGCCCGGCGA
LOC_Os06g04420
Target Sequence 
CTCAAGTCGTGCAGCACCATGATGACACGGAGGAGTACGTGGAGCTCCGCACCATCGCCGGCCAGCGGCGCACGCTCCGC
GGCATCTCGCTGATCGAGATACTGTCCAAGCACTCCGACGACGAGGTGTACCTCGGCCAGCGCGACACGCCGGAGTGGAC
TTTGGACACAGCGAAGGAGGCATTCCGGCAATTCGGCGACCGCCTTGTCGGGATCAAGGCGCGCATCGCGGAGATGAACC
GGGACCCGCGCCTCAGGAATTGCACGGGCCCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis