Browse Element(s) Details


OsAffx.4821.1.S1_at

Description tigr:9634.m01294
TID=OsAffx.4821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DnaJ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1306011/11Chaperone protein dnaJ 16, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13030Os.18748.1.S1_at7/116+7132792..7139004LIM domain containing protein, expressed
LOC_Os06g13040OsAffx.15401.1.S1_at10/116+7143532..7145046Glycosyl hydrolases family 16 protein, expressed
LOC_Os06g13050OsAffx.27599.1.S1_at11/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13050Os.26702.1.A1_s_at4/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13060OsAffx.4821.1.S1_at11/116+7159388..7163157Chaperone protein dnaJ 16, putative, expressed
LOC_Os06g13070OsAffx.15402.1.S1_at11/116+7169698..7171450HhH-GPD superfamily base excision DNA repair protein
LOC_Os06g13080OsAffx.4822.1.S1_at11/116+7180703..7182460U-box domain containing protein, expressed
LOC_Os06g13090NANA6+7185602..7187077U-box domain containing protein, expressed
LOC_Os06g13100OsAffx.27601.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13100Os.15218.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000740biological_processnuclear membrane fusion
GO:0006457biological_processprotein folding
GO:0009553biological_processfemale gametophyte development
GO:0009558biological_processcellularization of megagametophyte
GO:0009958biological_processpositive gravitropism
GO:0010197biological_processpolar nuclei fusion
GO:0010198biological_processsynergid death
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005739cellular_componentmitochondrion
GO:0008092molecular_functioncytoskeletal protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4821.1.S1_at--1153--2431Chr06:7161161..7161185 (25 bp)
AAAATGGTGGCCTGAGCCTTGCTTT
LOC_Os06g13060
OsAffx.4821.1.S1_at--800--3851Chr06:7160702..7161174 (25 bp)
CTGAGCCTTGCTTTGCAGGAAGACA
LOC_Os06g13060
OsAffx.4821.1.S1_at--345--4731Chr06:7160651..7160675 (25 bp)
GCTGGGATGTATTTTCTTGGCTTTC
LOC_Os06g13060
OsAffx.4821.1.S1_at--185--8311Chr06:7160633..7160657 (25 bp)
GGCTTTCCTGTGTATCGTTTTGAAC
LOC_Os06g13060
OsAffx.4821.1.S1_at--1126--5631Chr06:7160365..7160389 (25 bp)
GACAGTACGAATCCCCTTAAACTCT
LOC_Os06g13060
OsAffx.4821.1.S1_at--735--9831Chr06:7160348..7160372 (25 bp)
TAAACTCTACGCTTCACTCAGGTGA
LOC_Os06g13060
OsAffx.4821.1.S1_at--850--10511Chr06:7160336..7160360 (25 bp)
TTCACTCAGGTGACAATTTCTTCAG
LOC_Os06g13060
OsAffx.4821.1.S1_at--786--791Chr06:7160284..7160308 (25 bp)
ATGTGGTGAATCTTTCCCTGCTGAA
LOC_Os06g13060
OsAffx.4821.1.S1_at--811--5931Chr06:7160216..7160240 (25 bp)
GAGCAGAGCTATCCAAATTTGAGAC
LOC_Os06g13060
OsAffx.4821.1.S1_at--1042--2991Chr06:7159812..7159836 (25 bp)
AATGAAATCCATGCGTCCTATACCA
LOC_Os06g13060
OsAffx.4821.1.S1_at--842--9231Chr06:7159797..7159821 (25 bp)
TCCTATACCAACAATTCACCACTGA
LOC_Os06g13060
Target Sequence 
AAAATGGTGGCCTGAGCCTTGCTTTGCAGGAAGACAGTGTAAAGACTGGGAAGGTTACTTCTGCTGGGATGTATTTTCTT
GGCTTTCCTGTGTATCGTTTTGAACAAAACAACCTGTGTCAATTACTTAAGACAGTACGAATCCCCTTAAACTCTACGCT
TCACTCAGGTGACAATTTCTTCAGAAGTGTGAACTATACTATAGAGGTTGTATGTGGTGAATCTTTCCCTGCTGAAAAGG
AGAAGCTCCAGAGTGTTGAGGCAAAGATACTCACAAAACGAGCAGAGCTATCCAAATTTGAGACCGAGTACAGAGAAATC
GATAATCTTCTGAAGGAAAGGAATGAAATCCATGCGTCCTATACCAACAATTCACCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis