Browse Element(s) Details


OsAffx.4822.1.S1_at

Description tigr:9634.m01296
TID=OsAffx.4822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=U-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1308011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13050OsAffx.27599.1.S1_at11/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13050Os.26702.1.A1_s_at4/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13060OsAffx.4821.1.S1_at11/116+7159388..7163157Chaperone protein dnaJ 16, putative, expressed
LOC_Os06g13070OsAffx.15402.1.S1_at11/116+7169698..7171450HhH-GPD superfamily base excision DNA repair protein
LOC_Os06g13080OsAffx.4822.1.S1_at11/116+7180703..7182460U-box domain containing protein, expressed
LOC_Os06g13090NANA6+7185602..7187077U-box domain containing protein, expressed
LOC_Os06g13100OsAffx.27601.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13100Os.15218.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13110OsAffx.27658.1.S1_at8/116+7195592..7200418retrotransposon protein, putative, unclassified
LOC_Os06g13120OsAffx.15403.1.S1_at11/116+7200592..7202995hypothetical protein
LOC_Os06g13130NANA6+7204228..7204818hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4822.1.S1_at--255--3751Chr06:7181684..7181708 (25 bp)
CTCTCCGGGATGAACCGGTCCAAGA
LOC_Os06g13080
OsAffx.4822.1.S1_at--862--7651Chr06:7181690..7181714 (25 bp)
GGGATGAACCGGTCCAAGATCGCGC
LOC_Os06g13080
OsAffx.4822.1.S1_at--1098--6311Chr06:7181692..7181716 (25 bp)
GATGAACCGGTCCAAGATCGCGCGC
LOC_Os06g13080
OsAffx.4822.1.S1_at--17--8992Chr06:7181694..7181718 (25 bp)
TGAACCGGTCCAAGATCGCGCGCAC
LOC_Os06g13080
OsAffx.4822.1.S1_at--878--4531Chr06:7181795..7181819 (25 bp)
GCCCTCCGCAGGATCGCCGTGATGA
LOC_Os06g13080
OsAffx.4822.1.S1_at--763--7971Chr06:7181805..7181829 (25 bp)
GGATCGCCGTGATGATCCTCGCGAA
LOC_Os06g13080
OsAffx.4822.1.S1_at--830--9011Chr06:7181840..7181864 (25 bp)
TGCCCGGACGGGAGGACCGCGCTGA
LOC_Os06g13080
OsAffx.4822.1.S1_at--1049--7631Chr06:7181849..7181873 (25 bp)
GGGAGGACCGCGCTGATGGACGGCG
LOC_Os06g13080
OsAffx.4822.1.S1_at--955--6171Chr06:7181936..7181960 (25 bp)
GAGGAGTACTGCATCTCGTCGCTGT
LOC_Os06g13080
OsAffx.4822.1.S1_at--202--7631Chr06:7181975..7181999 (25 bp)
GGGAGCCTGAGGTTCCGAGGGCTCG
LOC_Os06g13080
OsAffx.4822.1.S1_at--53--3831Chr06:7182134..7182158 (25 bp)
CTGCTCGGCCGGCAGTGGGACGACG
LOC_Os06g13080
Target Sequence 
CTCTCCGGGATGAACCGGTCCAAGATCGCGCGCACGCCGGGGGTGGTGCGGACGCTGCTCGCCGCGGCGGAGGCGGCGAG
GGACGACCGCGCCAACGAGGCCGACGCCGCCGCCCTCCGCAGGATCGCCGTGATGATCCTCGCGAACCTCGCCGGCTGCC
CGGACGGGAGGACCGCGCTGATGGACGGCGGCGCGGTGGCCGCCGTGGTGAGGCTGATGAGCAGCGGCTCCGCCGCGCCG
GGGAGCGCGGAGGAGGAGTACTGCATCTCGTCGCTGTACGGGATGAGCCGGGGGAGCCTGAGGTTCCGAGGGCTCGCGCG
CGCCGCCGGCGTCGAGGCCGCGCTCACGCCGGTGGCCGAGGGCGCCGGCGGCGTGGGCCGGGACATGGCGCGGCGGACGC
TCCGGGCGATGCGCGGGGAGGACGACGAGGCGGCGGTCACGGCCACGGGGCTGCTCGGCCGGCAGTGGGACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis