Browse Element(s) Details


OsAffx.4829.1.S1_at

Description tigr:9634.m01342
TID=OsAffx.4829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1351011/11Benzoate carboxyl methyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13490OsAffx.15409.1.S1_at11/116+7428731..7432792SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13500NANA6+7438413..7442219retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13510OsAffx.4829.1.S1_at11/116+7454886..7455585Benzoate carboxyl methyltransferase, putative
LOC_Os06g13520OsAffx.27614.1.S1_at11/116+7458468..7460721SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13530Os.11831.1.S1_at1/116+7467751..7468414Benzoate carboxyl methyltransferase, putative, expressed
LOC_Os06g13540OsAffx.10048.1.S1_x_at1/116+7468965..7473317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13550NANA6+7473909..7474599Jasmonate O-methyltransferase, putative
LOC_Os06g13560Os.11831.1.S1_at11/116+7479074..7481195SAM dependent carboxyl methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4829.1.S1_at--857--1111Chr06:7454939..7454963 (25 bp)
AGTGATCAGCAAATATTGTGCAAGC
LOC_Os06g13510
OsAffx.4829.1.S1_at--340--31Chr06:7454953..7454977 (25 bp)
ATTGTGCAAGCATAGGTCACCACCC
LOC_Os06g13510
OsAffx.4829.1.S1_at--471--2711Chr06:7454960..7454984 (25 bp)
AAGCATAGGTCACCACCCAGTTGAC
LOC_Os06g13510
OsAffx.4829.1.S1_at--542--1231Chr06:7454978..7455002 (25 bp)
AGTTGACCTTCAGTTCTTCCTGAAT
LOC_Os06g13510
OsAffx.4829.1.S1_at--95--5511Chr06:7455045..7455069 (25 bp)
GAACAACTTGATAATTTGGTCACCA
LOC_Os06g13510
OsAffx.4829.1.S1_at--569--5391Chr06:7455084..7455108 (25 bp)
GAAGCAGATACACTGCCGCAGTACT
LOC_Os06g13510
OsAffx.4829.1.S1_at--539--1991Chr06:7455095..7455119 (25 bp)
ACTGCCGCAGTACTATGTTGTTGGA
LOC_Os06g13510
OsAffx.4829.1.S1_at--189--571Chr06:7455128..7455152 (25 bp)
ATCCTACTATACAAGGGTGCTCCCT
LOC_Os06g13510
OsAffx.4829.1.S1_at--242--9851Chr06:7455137..7455161 (25 bp)
TACAAGGGTGCTCCCTGACAAGAGT
LOC_Os06g13510
OsAffx.4829.1.S1_at--962--111Chr06:7455175..7455199 (25 bp)
ATTCATCGTATTCCCTACATTGGCT
LOC_Os06g13510
OsAffx.4829.1.S1_at--903--9871Chr06:7455190..7455554 (25 bp)
TACATTGGCTTTCCCCGATAATGAA
LOC_Os06g13510
Target Sequence 
AGTGATCAGCAAATATTGTGCAAGCATAGGTCACCACCCAGTTGACCTTCAGTTCTTCCTGAATGATCTGCCTGAACAAC
TTGATAATTTGGTCACCAAAGATCAAGACCAAGAAGCAGATACACTGCCGCAGTACTATGTTGTTGGATTGCCAAGATCC
TACTATACAAGGGTGCTCCCTGACAAGAGTGTTCACCTCTTCCATTCATCGTATTCCCTACATTGGCTTTCCCCGATAAT
GAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis