Browse Element(s) Details


OsAffx.4844.1.S1_at

Description tigr:9634.m01526
TID=OsAffx.4844.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Chalcone and stilbene synthases, C-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1525011/11Chalcone and stilbene synthases, C-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15210NANA6+8618081..8619373hypothetical protein
LOC_Os06g15220OsAffx.27644.1.S1_at11/116+8621594..8622472hypothetical protein
LOC_Os06g15230NANA6+8624241..8624517retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15240NANA6+8633908..8634504expressed protein
LOC_Os06g15250OsAffx.4844.1.S1_at11/116+8644292..8645806Chalcone and stilbene synthases, C-terminal domain containing protein
LOC_Os06g15260NANA6+8659216..8665329hypothetical protein
LOC_Os06g15270NANA6+8668561..8669973retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0042335biological_processcuticle biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4844.1.S1_at--562--2751Chr06:8644854..8644878 (25 bp)
AAGACAGGGCGTACCGGTGCGCGTA
LOC_Os06g15250
OsAffx.4844.1.S1_at--190--7791Chr06:8644839..8644863 (25 bp)
GGTGCGCGTACCACGAGGAGGACGG
LOC_Os06g15250
OsAffx.4844.1.S1_at--898--7551Chr06:8644803..8644827 (25 bp)
TGGGGGTGAACCTGTCCAAGGACAT
LOC_Os06g15250
OsAffx.4844.1.S1_at--1096--2091Chr06:8644746..8644770 (25 bp)
ACATCGCGACGGTAGGCTCCCGCGT
LOC_Os06g15250
OsAffx.4844.1.S1_at--824--4731Chr06:8644691..8644715 (25 bp)
GCTGTCACTCCTCGCGCGCAAAGTG
LOC_Os06g15250
OsAffx.4844.1.S1_at--639--5731Chr06:8644653..8644677 (25 bp)
GACGGAAGGCGATCAAACTCCACGT
LOC_Os06g15250
OsAffx.4844.1.S1_at--1027--871Chr06:8644647..8644671 (25 bp)
AGGCGATCAAACTCCACGTGCCCGA
LOC_Os06g15250
OsAffx.4844.1.S1_at--1151--7471Chr06:8644417..8644441 (25 bp)
GTGTGGATGATCTGCTTCGGGTCGG
LOC_Os06g15250
OsAffx.4844.1.S1_at--543--4231Chr06:8644338..8644362 (25 bp)
CCGACGGGCCGTGGGCTGATTCCAT
LOC_Os06g15250
OsAffx.4844.1.S1_at--163--7491Chr06:8644328..8644352 (25 bp)
GTGGGCTGATTCCATCCATCAGTAT
LOC_Os06g15250
OsAffx.4844.1.S1_at--10--8831Chr06:8644322..8644346 (25 bp)
TGATTCCATCCATCAGTATCCCGTG
LOC_Os06g15250
Target Sequence 
AAGACAGGGCGTACCGGTGCGCGTACCACGAGGAGGACGGCGACGGCAACCTGGGGGTGAACCTGTCCAAGGACATCGTC
CCCGTCGCCGGCGAGATGCTCAAGGCCAACATCGCGACGGTAGGCTCCCGCGTGCTCCCGTTGTCGGAGAAGCTGCTCTA
CGCGCTGTCACTCCTCGCGCGCAAAGTGGCCGGCAGCCGACGACGGAAGGCGATCAAACTCCACGTGCCCGACTTCCGCA
CGGCGTTCGAGCACTTCTGCATCCACGCCGGCGGCCGGTCGGTGATCGACGCCGTGCAGAGCGGCCTCGGCCTCGCCGAC
GAGGACGTGGAGGCGTCGCGGATGGCGCTCCACCGGTTCGGCAACACGTCGAGCAGCTCGGTGTGGTACGAGCTGGCGTA
CGTCGAGGCCAAGGGACGCATGCGCCGCGGCGACCGCGTGTGGATGATCTGCTTCGGGTCGGGGTTCAAGTGCAACAGCG
CGGCGTGGGAGTGCATCTCGCTGCCGGCGCGCGACGCCGACGGGCCGTGGGCTGATTCCATCCATCAGTATCCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis