Browse Element(s) Details


OsAffx.27644.1.S1_at

Description tigr:9634.m01522
TID=OsAffx.27644.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1522011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15170Os.27155.1.S1_at9/116+8597145..8598913very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os06g15180Os.14491.2.S1_x_at2/116+8600270..8601527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15180Os.47463.1.S1_x_at2/116+8600270..8601527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15180Os.41934.1.A1_x_at1/116+8600270..8601527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15190NANA6+8605070..8607444transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15200OsAffx.8731.1.S1_at1/116+8610138..8613561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15200OsAffx.940.1.S1_x_at1/116+8610138..8613561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15210NANA6+8618081..8619373hypothetical protein
LOC_Os06g15220OsAffx.27644.1.S1_at11/116+8621594..8622472hypothetical protein
LOC_Os06g15230NANA6+8624241..8624517retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15240NANA6+8633908..8634504expressed protein
LOC_Os06g15250OsAffx.4844.1.S1_at11/116+8644292..8645806Chalcone and stilbene synthases, C-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27644.1.S1_at--417--5011Chr06:8622418..8622442 (25 bp)
GCAGGCGAGCAGTGCGCACCAAAGA
LOC_Os06g15220
OsAffx.27644.1.S1_at--315--7711Chr06:8622393..8622417 (25 bp)
GGTGGACAACGACATCTCAGCGGTT
LOC_Os06g15220
OsAffx.27644.1.S1_at--517--8231Chr06:8622366..8622390 (25 bp)
GGCAAAAGCGATGCTTCGGTCCTCA
LOC_Os06g15220
OsAffx.27644.1.S1_at--1031--9431Chr06:8622351..8622375 (25 bp)
TCGGTCCTCACTGCTTAATGCTGGG
LOC_Os06g15220
OsAffx.27644.1.S1_at--333--2911Chr06:8622310..8622334 (25 bp)
AAGGAGGAGTTGTTCACCTGGGCCA
LOC_Os06g15220
OsAffx.27644.1.S1_at--321--5511Chr06:8621788..8622268 (25 bp)
GAACAAGCAATTCTGCACCTTGCCA
LOC_Os06g15220
OsAffx.27644.1.S1_at--141--5111Chr06:8621745..8621769 (25 bp)
GCACTGCTCAGGAGGCTAGTGGCCT
LOC_Os06g15220
OsAffx.27644.1.S1_at--1032--911Chr06:8621733..8621757 (25 bp)
AGGCTAGTGGCCTTCTATTCTCTGT
LOC_Os06g15220
OsAffx.27644.1.S1_at--454--10591Chr06:8621716..8621740 (25 bp)
TTCTCTGTTGTGCTTCTTGATGTCA
LOC_Os06g15220
OsAffx.27644.1.S1_at--1105--5611Chr06:8621672..8621696 (25 bp)
GACAACGAGGATGGTCATTGACGCT
LOC_Os06g15220
OsAffx.27644.1.S1_at--639--8211Chr06:8621636..8621660 (25 bp)
GGCCCTCGTCGGTGTTGAGAATTTA
LOC_Os06g15220
Target Sequence 
GCAGGCGAGCAGTGCGCACCAAAGAGGTGGACAACGACATCTCAGCGGTTGAGGCAAAAGCGATGCTTCGGTCCTCACTG
CTTAATGCTGGGCAACGCCTTCACCAACAAGGAGGAGTTGTTCACCTGGGCCAAGAACAACAACCGCGACTGCTCCACGT
CGACGGCATTGACAGAACAAGCAATTCTGCACCTTGCCATGCAAATCCACACCACCGGCACTGCTCAGGAGGCTAGTGGC
CTTCTATTCTCTGTTGTGCTTCTTGATGTCAATGAACCGGATGTGGCGGCGACAACGAGGATGGTCATTGACGCTAGATG
GCGGGTGGCCCTCGTCGGTGTTGAGAATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis