Browse Element(s) Details


OsAffx.8731.1.S1_at

Description gb:XM_354129.1
DB_XREF= gi:35189691
GEN=OJ1779_B07.14
TID=OsAffx.8731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g152001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15150NANA6+8583739..8589596retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15160OsAffx.22896.1.S1_x_at1/116+8590631..8591158transposon protein, putative, unclassified
LOC_Os06g15170Os.27155.1.S1_at9/116+8597145..8598913very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os06g15180Os.14491.2.S1_x_at2/116+8600270..8601527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15180Os.47463.1.S1_x_at2/116+8600270..8601527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15180Os.41934.1.A1_x_at1/116+8600270..8601527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15190NANA6+8605070..8607444transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15200OsAffx.8731.1.S1_at1/116+8610138..8613561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15200OsAffx.940.1.S1_x_at1/116+8610138..8613561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15210NANA6+8618081..8619373hypothetical protein
LOC_Os06g15220OsAffx.27644.1.S1_at11/116+8621594..8622472hypothetical protein
LOC_Os06g15230NANA6+8624241..8624517retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15240NANA6+8633908..8634504expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8731.1.S1_at--616--3391Chr07:6359332..6359356 (25 bp)
CAGCTTGCCTTCATCTTTTAGCAGA
NONE
OsAffx.8731.1.S1_at--424--10531Chr07:6359323..6359347 (25 bp)
TTCATCTTTTAGCAGAAGGTGCAAT
NONE
OsAffx.8731.1.S1_at--301--5311Chr07:6359309..6359333 (25 bp)
GAAGGTGCAATAGACGTTCTGGAGC
NONE
OsAffx.8731.1.S1_at--434--291Chr07:6359300..6359324 (25 bp)
ATAGACGTTCTGGAGCATTTTGGCA
NONE
OsAffx.8731.1.S1_at--865--6711Chr07:6359294..6359318 (25 bp)
GTTCTGGAGCATTTTGGCAGAGGTT
NONE
OsAffx.8731.1.S1_at--244--7931Chr07:6359273..6359297 (25 bp)
GGTTGGAAGACCTAGCTCTATGCCT
NONE
OsAffx.8731.1.S1_at--673--2771Chr07:6359267..6359291 (25 bp)
AAGACCTAGCTCTATGCCTCTTTGG
NONE
OsAffx.8731.1.S1_at--442--9191Chr07:6359253..6359277 (25 bp)
TGCCTCTTTGGCTTGGTTCATAACT
NONE
OsAffx.8731.1.S1_at--629--9552Chr07:6359251..6359273 (23 bp)
TCTTTGGCTTGGTTCATAACTGGAA
NONE
OsAffx.8731.1.S1_at--1034--6731Chr07:6359130..6359262 (25 bp)
GTTCATAACTGGAACCTTGGCCAGC
NONE
OsAffx.8731.1.S1_at--816--2551Chr07:6359124..6359144 (21 bp)
AACTGGAACCTTGGCCAGCATGAGA
NONE
Target Sequence 
CAGCTTGCCTTCATCTTTTAGCAGAAGGTGCAATAGACGTTCTGGAGCATTTTGGCAGAGGTTGGAAGACCTAGCTCTAT
GCCTCTTTGGCTTGGTTCATAACTGGAACCTTGGCCAGCATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis