Browse Element(s) Details


OsAffx.4860.1.S1_at

Description tigr:9634.m01744
TID=OsAffx.4860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1730011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17270OsAffx.15471.1.S1_at11/116+9999558..9999839hypothetical protein
LOC_Os06g17280Os.53666.1.S1_s_at11/116+10002547..10005954PHD-finger family protein, expressed
LOC_Os06g17280Os.53666.1.S1_x_at11/116+10002547..10005954PHD-finger family protein, expressed
LOC_Os06g17290Os.17915.1.S1_at11/116+10012886..10016979phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os06g17300OsAffx.4860.1.S1_at11/116+10022892..10023125hypothetical protein
LOC_Os06g17309Os.52772.1.S1_at1/116+10032485..10034342NA
LOC_Os06g17320Os.47463.1.S1_x_at5/116+10037190..10038184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17320Os.14491.2.S1_x_at4/116+10037190..10038184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17330NANA6+10038369..10040890transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17340NANA6+10043686..10046991transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4860.1.S1_at--206--1631Chr06:10023071..10023095 (25 bp)
AGCGGCGGCTTTGAACATATCAATG
LOC_Os06g17300
OsAffx.4860.1.S1_at--172--8311Chr06:10023065..10023089 (25 bp)
GGCTTTGAACATATCAATGCCACCT
LOC_Os06g17300
OsAffx.4860.1.S1_at--29--10171Chr06:10023054..10023078 (25 bp)
TATCAATGCCACCTCCGAGAAGACG
LOC_Os06g17300
OsAffx.4860.1.S1_at--223--3031Chr06:10023050..10023074 (25 bp)
AATGCCACCTCCGAGAAGACGCTGA
LOC_Os06g17300
OsAffx.4860.1.S1_at--1144--1751Chr06:10023044..10023068 (25 bp)
ACCTCCGAGAAGACGCTGACGACAG
LOC_Os06g17300
OsAffx.4860.1.S1_at--944--9651Chr06:10023012..10023036 (25 bp)
TCAGCCAGATCCTGCGAGCATGACG
LOC_Os06g17300
OsAffx.4860.1.S1_at--608--1291Chr06:10023006..10023030 (25 bp)
AGATCCTGCGAGCATGACGCGATCC
LOC_Os06g17300
OsAffx.4860.1.S1_at--935--1531Chr06:10022996..10023020 (25 bp)
AGCATGACGCGATCCGCGCCAGAGT
LOC_Os06g17300
OsAffx.4860.1.S1_at--130--3391Chr06:10022977..10023001 (25 bp)
CAGAGTGCCCTCTCTTATCGCCGGA
LOC_Os06g17300
OsAffx.4860.1.S1_at--463--3071Chr06:10022930..10022954 (25 bp)
AATCTTGTCGCCCTTTGCCACAGGG
LOC_Os06g17300
OsAffx.4860.1.S1_at--725--9331Chr06:10022923..10022947 (25 bp)
TCGCCCTTTGCCACAGGGAGCTCGA
LOC_Os06g17300
Target Sequence 
AGCGGCGGCTTTGAACATATCAATGCCACCTCCGAGAAGACGCTGACGACAGCGGCGGCTCAGCCAGATCCTGCGAGCAT
GACGCGATCCGCGCCAGAGTGCCCTCTCTTATCGCCGGAGAGCTTGAGCTCAAGCGCCGCCAATCTTGTCGCCCTTTGCC
ACAGGGAGCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis