Browse Element(s) Details


OsAffx.4963.1.S1_at

Description tigr:9634.m02854
TID=OsAffx.4963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2974011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29710OsAffx.15668.1.S1_at11/116+17053548..17065625F-box domain containing protein, expressed
LOC_Os06g29730Os.28011.1.S1_at10/116+17065931..17067615expressed protein
LOC_Os06g29740OsAffx.4963.1.S1_at11/116+17076764..17079195F-box domain containing protein
LOC_Os06g29750NANA6+17081882..17084807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29760Os.10703.2.S1_x_at1/116+17085123..17091233retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29770OsAffx.15669.1.S1_at10/116+17103032..17104994hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4963.1.S1_at--1037--6131Chr06:17077553..17077577 (25 bp)
GAGGGTTGTTATGCCATTGGTGATC
LOC_Os06g29740
OsAffx.4963.1.S1_at--547--7751Chr06:17077571..17077595 (25 bp)
GGTGATCACTTAAATGGTTCTGTAT
LOC_Os06g29740
OsAffx.4963.1.S1_at--50--10611Chr06:17077588..17077612 (25 bp)
TTCTGTATTTCTTCACCACTTATCA
LOC_Os06g29740
OsAffx.4963.1.S1_at--592--1711Chr06:17077602..17077626 (25 bp)
ACCACTTATCACATACTACTCACAT
LOC_Os06g29740
OsAffx.4963.1.S1_at--972--5251Chr06:17078122..17078146 (25 bp)
GAATGACTCTATTTCAACCATATTT
LOC_Os06g29740
OsAffx.4963.1.S1_at--1031--8591Chr06:17078162..17078186 (25 bp)
TGGTGCCCGCTCTTTAGAAACTTAA
LOC_Os06g29740
OsAffx.4963.1.S1_at--666--7651Chr06:17078230..17078254 (25 bp)
GGGAGTACTTCGCATTCTACAACAT
LOC_Os06g29740
OsAffx.4963.1.S1_at--739--111Chr06:17078243..17078267 (25 bp)
ATTCTACAACATTCACCTGCTTTGG
LOC_Os06g29740
OsAffx.4963.1.S1_at--756--4271Chr06:17078258..17078282 (25 bp)
CCTGCTTTGGAGAAGATCACTCTTA
LOC_Os06g29740
OsAffx.4963.1.S1_at--748--2211Chr06:17078436..17078460 (25 bp)
ACAACCATTTGTGATGAACCATCTC
LOC_Os06g29740
OsAffx.4963.1.S1_at--1083--2511Chr06:17078523..17078547 (25 bp)
AACTCAATTTGGCATACCTCACCAG
LOC_Os06g29740
Target Sequence 
GAGGGTTGTTATGCCATTGGTGATCACTTAAATGGTTCTGTATTTCTTCACCACTTATCACATACTACTCACATGGAGTT
GACAAATGACTGCAGAATGAATATGAATGACTCTATTTCAACCATATTTGATAGAGATTTGAAATGGTGCCCGCTCTTTA
GAAACTTAAAGACACTGCTATTGAACGAGTGGTTTTTGGAAAATGGATTACGGGGAGTACTTCGCATTCTACAACATTCA
CCTGCTTTGGAGAAGATCACTCTTAAACTCTATATGGAACCTAAAAAGATTGTGGAAAATGAAGAAAGCTATGGTACAAT
GGAACAACCATTTGTGATGAACCATCTCAAGAAAATCAGTGTCAAATGTCAAAAGGAAGTGATGTGGGTTAAAAAGATCA
TAATGACCTTAACTCAATTTGGCATACCTCACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis